Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu1g0486 ATGGAGGGCGCGTGGCAGCGGAATTTTGATTCGCCATTTCAGCCGCCGACGTCTGCGACGGTTTCCTCCGCACCGTCGCCGGAGCCGAAGGGGATGAATGCAAGTTATTTTTATCCACAAGTTGCCCTTGGTTTAAGATCAAAATTTGTTGGAGGGAAGCAAGTTCCTGATTACCCAAGTTTTCCCCTCTCAACCACCCTTGGATCAGGCCAAGCCGATGCTGGAAATTCATTTCTGGCTCTACTCCATGGTACTCCATCCTTGTTACAGTATGATTTCCAGAATTTGTCTGAACGCACGCTTGGCATCTCATCTGGTGATTCTACTGATGCTATTAGGAATTCTTTTGTTAGTTCTATAGAAAGAGGAAACTTCTGGACATCTGGTGTGGGTTTGATAACAGAAAATTTGATTAACTGTAACCTGCAAAGTTGGGTGAATAACTTTCCAGAGATTTCTTCTAGAGCAATGGTTGGTTTGAATAATAGTAGTAATTTTGTCTTCCACAATATTCGGGGCAGCAATACTGCTACTCAGCCCACAGTTCCTGGTGGTGGGAAAGCGAGGGAATCTTTTTCTTTTCCAGGTCAGTGCCGTGGTACATGCCCCGCATTTGGTCAAAATGTTTGCTGCTCAGATATTCAGACTACACCTAATATTGCTTTAGAATGGTGCTCATCTAAGTCTGCAACTTCATTTATGAGTGGGTGTCCTCGTGTGTTCTGCATGGGAAAATGTGGCCATCTTCTTCTTAGCCATACAGGGCTTCTTGGTGTTTTTTGCTCATGCCATTGTTGCCACATGTCTGTTCTTAAGTTTTGTGAGCATTCAGGGTTACATGGCGTTGACCCAGGGGTTGCTGTTTGTATGGAGAGTGGAGAGACTATTTCAGAATGGCGGAAGCTTTACTTCTTGAAGTTTGGGATTAGGTCTCTGGGGAATGAGAATGAATGGGACTGGCCAGAAGTATTATCAACAACAGGCAGTCCGATGAAATCCAATGCATCTGCTTTTGATGTGTCCAAGACTAACTTGTCTCATATGTTGAGTTCATCTGCAGTTATGTCAAGAAAACAAGCAACGACAATCCAGGATGGTTGCAACATTCCACTCAAAGGTTGTACTGGTATTTCACAAAAGAGCTTTGTTGATCAGTTGAAAAATCAGTTAATGGAATCTAATCTGGGTATGTATACAACTGCACCAAATTTTGGTGGAACTCAACTGGATGATGGTTGTCACCCTATACCTCCTTTCTTGGATTCTCTGAAAGGGACAGGAAGTTTGTCAACTGCCCACTCACCTTTGCAAACACCAACAAACTTTTTGAAAGACCGTGATTGCATAACAAAGAATGCAAATGATGGTCTTGCAGGCAGAGACGCAGCTTCCTCCAATGTTGATCTTAGGCTTGGTCAACCACCTCAGACAGGAAATCCACTTCCATCATTTATAGAACCCCTGCTGTATGCCCTTGCCAGTCCACCAAAATTGCAACCTCAGAAGCAGATGATTAATAACCTCAGCAGGGAGGAGGGATTGCAGAATAATTTTAGTTATGCTGCTGGTTCATTCAAAATGGTTGAAGAATTGCCTCAGCTTAAACCCAAGAACTATATGTCAGCTGTGAGTAAGGGTTCTGCTAAAGCTGGATTGGAAGCCAAAAATGTGGCCAAGGGTGTATCATTTTCACCATTTTCGCGAATTGATATAGCTGGAGGGAAGACACAAGCTAGTGAAAATTTGTGGAACGGTGTCAGCCCTCTCATGCCTAAGAAACTGTATTCTGATTATGGTCACACAGGAGGGCAATCAAATAAACCTGTAATCGGGACCAATAAATATTTGGGCAATAATAAAGGGGTGAGCTTTGCCAAAGATTCTGGTGCCAAAAAAAATTCTGGATTTGGAATTGGTCAGTTAATGGAATATCTAAGCTCCATTAGGAGAGCCGTTGGTGGTTATGATAGTAGTATTTCAGTTGTTAACGAAAAGATGTATGAATCAAATTTTGAATCTAGCTTGCCATTAGATACATCTATGGGTGCAAATATTTTGCATGGTTCACACAATATGTCTTCTCTTGGACTACAAAATCATGTGAATCAACAGACCTCCATTCCATTTAAAGAGATTTTGAAAGGCCTTCCGAATCATGCTTCAATTTCTGTGTCAAATCAGACTCCAACTTTGCCACAACAGGAGGCAATTAATATGGATGCTTGTTTAGTTGATGAAAAGACGAGGTTGCTTGCAATGAGACAGATACGGGAGTTATCTGAGCAACATCATGCATTGCATTTTAATATGAAACAGAAGCAAGGGGGATCCAGCAGTATTTCGAAAGTTCAGCATTATGCTTGTGAGGCTTCAACATCTGAGCAGGGAACCTCTTGTACAACATTGAAATTGCCTCAAGATAGAGGAATTTTTGGGAATCATGAGAATACTGTTGGTTTGGAGAAGTTGCCTTCCCTCATAGGTATGAACGGATATTATCATTTGTCTGACCTGTCGCCAACACCTTTACATTCTAAAGAAAAGGAAACGCAATGTAAACATTCTTGTGATCTTCAAAATGAAGAAACTTCTTTAAGCCTTGGTATAAAGAAAGACAATATCAGATCAAGTGCATGTGAAAAATGCTCTGAGCAACCATCAAATATATGTCTGGAAGGCGAGTATCCTTCTGCTGCTCTGATAAACTGTTGCCGAAGCAACTTTTCCTCAGGGATTGAACCCCTTTGTAATAACCTAAGGCAACAATTTGCTAATGTCAGTGGTGAAACTTCTTTGAAGATGCCTTCAGATTTGTGGAGAAATCTGAATACTTCGAACAACAGAAATATCCACTTTGAGCAAGGTGGGAAGATACTTGGCCAAGACTCAACCAGAATTGGCTTTCATGCCCCTCAGTGGAGAGATGTGCCCAGTAAGGTCAGGAAAGCAGTTTGTGATGCAACATCTTTAGATCAAACATCTACTGGTTTGGATAGGGAAGGACGGGATGATTTTCAACTTGGAAACATTTCCGTGAAACGCCCCAAAAGAACTATTGATATGGGAGACCTGTCAAAAGAGAAAGAAAATTCTAATGTTTCTTCTGGATGCTCTGCTCCTTTGGTTACTCAGGCATCTGTGATGGTCAACAAAATTGATTACTGTACTGATGATGCTGTTGACACTGGCTTTGTCAACAACCTTGTAGTTGATGAAGGTTCAGGTATTGATCAAGTCTCCTTGTCAGATTTAGTTGAAAGTGAAAGAACTGATGAGCTTCTAGGCTTGATCTCTGGGAATTACATGAAAAATGGTTGTTCGAGAGTCTTAAATGATGAATCATGTTGCAATCTCCTTGATGATCTTAAACTGTTAGATTCCTTGATATGGAAGAAAGAAAGGAATCAAAATCATTTTGTGGTTTCTGCTAATTGTAAAACCAATCAGTCTCATAATGTTAAGAGAGGCATCAAAGGAAGGAAGCGAAAGAGAAATGTGGTGAGGATTCTAGATGCTTCATTATCTTCTGAATTCCCTTCCTTGTTGCCCAATAAGAATGATGAGGGTGCTGAGATTTTGCATTCCTCTTCTAGTTTGCCAAATGAAATGCAAATGCACTCTCTGTCTAGCCTGCAGAAATCATTTAACAAGTCTTCCTTTGTTCAACCTTGTAACAAACGAATACAGTCTGCATTTTCATCCAAATTTAATTCCTGTAAGAATAGTCTGAGGAAGCATCTCAGTTATAAAGTTGCCCATGAGTCTCAATCAGATTCTTATGCGGAGTTTTGCACGTTGCCTGGAGTTTCTGGAACAAAGAAATTGAGAAATAATCTCACCTCTGATTGTTTTGAGCAGTTTCATATGCAAGAACCATCCTACGAGGAACCCAAAAAAGCCGAGTTGTGGCCATTCTTATGCAGGAAGGAAAATGGTCATAGAATCACAAGGCCAGTAGTATGTGGAAAATATGGTGAAATACGTAATGGGCATTTGGCTAAAGAGGTGCAAAAGCCTGCAAAAATTGTCTCCCTCAACAAGGTCCTTAAATCTTCCAAAAGATGTATGAGCTACACAAAGGGAAAACCTAGACTAACTTCAAAAAAGAAATGGAAGAGATTGAGTATTGGAACAGATAGTGAGTACTGCTGTGGGAACCGTGGTTTAAAAGTTAAGGAACACATTGAAACACAAAATACAATAATTTATAATGAAGCAAGTGTTGATATGTCTCTGGAAGACTTGGAGAGAGGTGGCAAGCAAGATGCGAAAGCTAAAGCTAAGCAGGGTGTTAGAGTTGGAAACAGAGAAAATGTTCTATTGAAGGTGAAGAACAAGGACATTCGGAAACATCGTAGCATTAATGAACTCACTGCTAAAGAAACCAAAGTAACGGATATGATGAGTTGTGCTCAAGACAGAGAGCCTGGTTTGTGTAGCACAAAACGTAGAAACTCAATTCAAGGTCACACAAACATATCAACTATATACTCAGATACCTTCTGCTGTGTGTGTCGAAGCTCAAGCAATGATAAAATAAACTGTTTGTTGGAATGTTGTCAATGCCTAATTAGAGTGCATCAAGCTTGCTATGGTGTTTCCACATTACCCAAAAAAAGTCGTTGGTGCTGCAGACCATGCCGAACCAACTCAAAAAATATTGCATGCGTCCTATGTGGTTATGGAGGTGGAGCCATGACTCGAGCAACAATGAGTCACACGATTGTCAAGAGCCTCCTAAAAGTTTGGAATAGTGAGAAAGATGACATGCCTAAGCATACAACTTCATGTGAATTTTTTGGGGAGGAAATATATGCATTCTCATCCTCAAAAGCTGATCAAGAAAGTGCTTTGAAGCCCAAAATTTTTGATGCATCAACTGATCTGGTGAAAGTTCGAATATCTACCAATAACACACAATACACTCCTACTACTCTTTATAGTTTCAAGGTACACAACAGCATTACTGAAGGAGTTCTTGATTCAACTGTTAAACAATGGATTCATATGGTTTGTGGTCTTTGGACTCCTGGAACAAGATGCCCAAATGTTGACACAATGAGTGCTTTTGATGTTTCTGGTGTTTCACGTCCCAGAGCAGATGTGGTTTGTTCCATTTGCAATCGATGGGGTGGTTCTTGTATAGAGTGCAGGATGGCTGATTGCTCTGTCAAGTTTCATCCTTGGTGTGCTCATCTAAAGAACCTGTTGCAAAGTGAGACTGAAGGTATTGATGATGAGAAGATTGGATTTTATGGGAGTTGCATGCTACATACTATTGAACCTAGTTATCTGTCCATATATGATCCTATTGATAAAATAGGAAGTCAAGAAGAAAAGGAATTCACCTGTGCCAGGGCAGAGGGTTACAAGGGCAGAAGATGGGATGGTTTTCAGAATAATCACTGCCAAGGTGGATGCGTTGTTCCTGAGGAGCAGCTTAATGCTTGGATTCACATCAATGGGCAGAAATTATGTTCTCAAGGACTCACAAAATTCTCAGATTTGGATATGGAGCATAATTGTCGAAAGGAATACACTCGGTACAAACAAGCAAAGGGATGGAAACACCTCGTTGTATACAAGTCCCGTATACATGCACTTGGTCTTTACACTTCTCGATTCATTTCCCGGGGTGAAGTGGTGGTTGAATATATTGGTGAAATTGTGGGATTGCGGGTGGCTGATAAAAGAGAGAAGGATTATCAATCTGGAAAGAAACTTCAGGACAAGAGTGCCTGCTACTTCTTCAGGATAGACAAAGAGCATATTATTGATGCCACGAGGAAAGGGGGGATTGCACGGTTTGTTAACCACTCATGCCTGCCAAATTGCGTGGCAAAAGTGATTACTGTAAGGCATGAAAAGAAGGTTGTCTTCTTTGCAGAGAGGGATATATTTCCTGGTGAAGAGATCACGTATGATTACCACTTTAACCACGAGGACGAAGGAAAGATTCCATGTTACTGCAATTCAAAAAATTGCAGGCGCTATATGAACTGA 6003 0.4086 MEGAWQRNFDSPFQPPTSATVSSAPSPEPKGMNASYFYPQVALGLRSKFVGGKQVPDYPSFPLSTTLGSGQADAGNSFLALLHGTPSLLQYDFQNLSERTLGISSGDSTDAIRNSFVSSIERGNFWTSGVGLITENLINCNLQSWVNNFPEISSRAMVGLNNSSNFVFHNIRGSNTATQPTVPGGGKARESFSFPGQCRGTCPAFGQNVCCSDIQTTPNIALEWCSSKSATSFMSGCPRVFCMGKCGHLLLSHTGLLGVFCSCHCCHMSVLKFCEHSGLHGVDPGVAVCMESGETISEWRKLYFLKFGIRSLGNENEWDWPEVLSTTGSPMKSNASAFDVSKTNLSHMLSSSAVMSRKQATTIQDGCNIPLKGCTGISQKSFVDQLKNQLMESNLGMYTTAPNFGGTQLDDGCHPIPPFLDSLKGTGSLSTAHSPLQTPTNFLKDRDCITKNANDGLAGRDAASSNVDLRLGQPPQTGNPLPSFIEPLLYALASPPKLQPQKQMINNLSREEGLQNNFSYAAGSFKMVEELPQLKPKNYMSAVSKGSAKAGLEAKNVAKGVSFSPFSRIDIAGGKTQASENLWNGVSPLMPKKLYSDYGHTGGQSNKPVIGTNKYLGNNKGVSFAKDSGAKKNSGFGIGQLMEYLSSIRRAVGGYDSSISVVNEKMYESNFESSLPLDTSMGANILHGSHNMSSLGLQNHVNQQTSIPFKEILKGLPNHASISVSNQTPTLPQQEAINMDACLVDEKTRLLAMRQIRELSEQHHALHFNMKQKQGGSSSISKVQHYACEASTSEQGTSCTTLKLPQDRGIFGNHENTVGLEKLPSLIGMNGYYHLSDLSPTPLHSKEKETQCKHSCDLQNEETSLSLGIKKDNIRSSACEKCSEQPSNICLEGEYPSAALINCCRSNFSSGIEPLCNNLRQQFANVSGETSLKMPSDLWRNLNTSNNRNIHFEQGGKILGQDSTRIGFHAPQWRDVPSKVRKAVCDATSLDQTSTGLDREGRDDFQLGNISVKRPKRTIDMGDLSKEKENSNVSSGCSAPLVTQASVMVNKIDYCTDDAVDTGFVNNLVVDEGSGIDQVSLSDLVESERTDELLGLISGNYMKNGCSRVLNDESCCNLLDDLKLLDSLIWKKERNQNHFVVSANCKTNQSHNVKRGIKGRKRKRNVVRILDASLSSEFPSLLPNKNDEGAEILHSSSSLPNEMQMHSLSSLQKSFNKSSFVQPCNKRIQSAFSSKFNSCKNSLRKHLSYKVAHESQSDSYAEFCTLPGVSGTKKLRNNLTSDCFEQFHMQEPSYEEPKKAELWPFLCRKENGHRITRPVVCGKYGEIRNGHLAKEVQKPAKIVSLNKVLKSSKRCMSYTKGKPRLTSKKKWKRLSIGTDSEYCCGNRGLKVKEHIETQNTIIYNEASVDMSLEDLERGGKQDAKAKAKQGVRVGNRENVLLKVKNKDIRKHRSINELTAKETKVTDMMSCAQDREPGLCSTKRRNSIQGHTNISTIYSDTFCCVCRSSSNDKINCLLECCQCLIRVHQACYGVSTLPKKSRWCCRPCRTNSKNIACVLCGYGGGAMTRATMSHTIVKSLLKVWNSEKDDMPKHTTSCEFFGEEIYAFSSSKADQESALKPKIFDASTDLVKVRISTNNTQYTPTTLYSFKVHNSITEGVLDSTVKQWIHMVCGLWTPGTRCPNVDTMSAFDVSGVSRPRADVVCSICNRWGGSCIECRMADCSVKFHPWCAHLKNLLQSETEGIDDEKIGFYGSCMLHTIEPSYLSIYDPIDKIGSQEEKEFTCARAEGYKGRRWDGFQNNHCQGGCVVPEEQLNAWIHINGQKLCSQGLTKFSDLDMEHNCRKEYTRYKQAKGWKHLVVYKSRIHALGLYTSRFISRGEVVVEYIGEIVGLRVADKREKDYQSGKKLQDKSACYFFRIDKEHIIDATRKGGIARFVNHSCLPNCVAKVITVRHEKKVVFFAERDIFPGEEITYDYHFNHEDEGKIPCYCNSKNCRRYMN* 2001
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu1g0486 2000 SMART PostSET_3 1984 2000 IPR003616 -
Pvu1g0486 2000 CDD SET_SETD1-like 1858 1996 - -
Pvu1g0486 2000 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1487 1555 IPR013083 -
Pvu1g0486 2000 PANTHER HISTONE-LYSINE-N-METHYLTRANSFERASE 2 KMT2 FAMILY MEMBER 36 2000 - -
Pvu1g0486 2000 SUPERFAMILY FYVE/PHD zinc finger 1497 1553 IPR011011 -
Pvu1g0486 2000 ProSiteProfiles Post-SET domain profile. 1984 2000 IPR003616 -
Pvu1g0486 2000 Pfam Tify domain binding domain 256 302 IPR032308 -
Pvu1g0486 2000 ProSiteProfiles Extended PHD (ePHD) domain profile. 1642 1759 IPR034732 -
Pvu1g0486 2000 ProSiteProfiles Zinc finger PHD-type profile. 1499 1550 IPR019787 -
Pvu1g0486 2000 CDD ePHD 1666 1749 - -
Pvu1g0486 2000 SMART set_7 1856 1983 IPR001214 GO:0005515
Pvu1g0486 2000 Pfam PHD-zinc-finger like domain 1662 1738 - -
Pvu1g0486 2000 SUPERFAMILY SET domain 1827 1996 IPR046341 -
Pvu1g0486 2000 ProSiteProfiles SET domain profile. 1856 1977 IPR001214 GO:0005515
Pvu1g0486 2000 Pfam SET domain 1869 1976 IPR001214 GO:0005515
Pvu1g0486 2000 Pfam PHD-finger 1514 1548 - -
Pvu1g0486 2000 SMART PHD_3 1501 1548 IPR001965 -
Pvu1g0486 2000 SMART PHD_3 1703 1759 IPR001965 -
Pvu1g0486 2000 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE TRITHORAX 36 2000 - -
Pvu1g0486 2000 MobiDBLite consensus disorder prediction 10 29 - -
Pvu1g0486 2000 Gene3D SET domain 1769 2000 IPR046341 -
Pvu1g0486 2000 MobiDBLite consensus disorder prediction 1 29 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu1g0486 Pvu-Chr1 5167755 5186024 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu1g0486 1858 1996 C2H2 Transcription Factor Family AT2G23740 34.591 9.86e-17 85.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Pvu1g0486 SET 1.8e-17 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu1g0486 - - gmx:100812602 3009.94