Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu1g0484 ATGGCAAAATATATACCTAAAACAGGTTCGCGTAAAAACGTACGTATTGGTTCGCGGAATCATACGCGTAAAATACCAAAAGGAATTATTCAGGTTCAAGCTAGTTTCAACAATACTATTGTAACTATTACAGATGTACGAGGTCGGGTGATTTCTTGGTCCTCCGCTGGTACTTGTGGATTCAAGGGTACACGAAGGGGAACACCTTTTGCCGCTCAAACTGCAGCAGGAAATGCTATTCGAACAGTATCGGATCAAGGTATGCAACGAGCAGAAATCATGATCAAAGGGCCTGGTCTCGGAAGAGATGCAACATTAAGGGCTATTCGTAGAAGTGGTATACTCTTAAATTTTATACGAGATGTAACTCCTATGCCACATAATGGATGTAGGTCTCCTAAAAAAGACGTGTATAAAACTAAAAATAAACATGAAAAATATTTCAAGAGAAATAAACAAGTCAAGAGTTTGATCAAAATAATAGATTACTATGGTTCAAGAGAAATTAAGAGTCTCTACTCGGACACTACAATGGAAATGTGTTGA 546 0.3791 MAKYIPKTGSRKNVRIGSRNHTRKIPKGIIQVQASFNNTIVTITDVRGRVISWSSAGTCGFKGTRRGTPFAAQTAAGNAIRTVSDQGMQRAEIMIKGPGLGRDATLRAIRRSGILLNFIRDVTPMPHNGCRSPKKDVYKTKNKHEKYFKRNKQVKSLIKIIDYYGSREIKSLYSDTTMEMC* 182
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu1g0484 181 Hamap 30S ribosomal protein S11 [rpsK]. 3 138 IPR001971 GO:0003735|GO:0005840|GO:0006412
Pvu1g0484 181 ProSitePatterns Ribosomal protein S11 signature. 106 128 IPR018102 -
Pvu1g0484 181 PANTHER 40S RIBOSOMAL PROTEIN S14/30S RIBOSOMAL PROTEIN S11 1 135 IPR001971 GO:0003735|GO:0005840|GO:0006412
Pvu1g0484 181 PANTHER 30S RIBOSOMAL PROTEIN S11, CHLOROPLASTIC 1 135 - -
Pvu1g0484 181 TIGRFAM uS11_bact: ribosomal protein uS11 21 135 IPR019981 GO:0003735|GO:0005840|GO:0006412
Pvu1g0484 181 Pfam Ribosomal protein S11 28 135 IPR001971 GO:0003735|GO:0005840|GO:0006412
Pvu1g0484 181 SUPERFAMILY Translational machinery components 23 135 - -
Pvu1g0484 181 Gene3D Ribosomal protein S11 9 136 IPR036967 GO:0003735|GO:0005840|GO:0006412
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu1g0484 1 128 Cytoplasmic Ribosomal Protein Gene Family AT3G52580 30.657 5.35e-12 58.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu1g0484 K02948 - gmx:3989330 256.144