Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu1g0480 ATGAAAACGAAGCTTCTTCTTTTGCTTCTCATGCTCCTCCTTGTTCTTCACAAACCCATTTGGACTCTTGCCTCACCATACCCTCTTGCCCCCTCACCTCAAGGTCCACCCTTTTCTCCATTTCCCAATTCAATGTCTGCTTCCTCTCCAGCAATTGTGATGGGGGCTGAAGAGCAGCAAATAGATTCGCACAAGAAAATGGTAATTGCTATTGCCGTAGCCAGCACTTCACTTGGTGCAGTCATTTTGAGTGTGTTGTGCATCTGGATTTATCATTCCAAGTACCCTTCAAAATCCAAAGGGAAAAACGTTCAAAGATCAGATGCTGAGAAAGGGCTAGCTTCATCACCAACTTTGAGTAAATTCAGCTCTATAAAGCTGGTTGGTAAGAAAGGGTGTGTTCCAATAATTGATTATAAGCAAATAGAAAAAGTCACCGGCAATTACAAGGAAAGTAACATCTTGGGTGAGGGAGGTTTTGGATGTGTTTACAAAGCACATTTGGCTGATAATTTGGAAGTTGCCGTTAAGAAATTGCACTGTGAAAATCAGTATGCTGAGCAAGAATATGAGAACGAGGTGGAATTGTTAAGTAAAATTCAACATCCAAATGTAATTTCTCTACTGGGATGTAGCAGTAATGAAGATACAAGGATTATTGTCTATGAATTGATGCATAATGGATCATTGGAAACACAATTACATGGACCTTCTCATGGCTCAGCATTGACTTGGCATTTGAGGATGAAAATTGCTCTTGACACAGCAAGGGGATTAAAATATCTGCATGAACACTGTTACCCTCCAGTGATCCATAGAGATCTGAAATCTTCTAATATTCTTTTGGATACAAAGTTCAATGCCAAGCTTTCTGATTTTGGTCTTGCCATAACCAATGGGACCCAAAACAAGAATAATATCAAGCTCTCAGGCACGTTGGGTTACGTAGCCCCAGAGTATCTTTTAGATGGTAAATTGACAGATAAAAGTGATGTATATGCTTTTGGAGTTGTGCTGTTGGAGCTTCTCTTGGGAAGAAAGCCTGTGGAAAAACTAGCACCAGCTCAATGCCAATCTATTGTCACATGGGCCATGCCACAGCTCACAGACAGACAAAAGCTTCCAAACATCGTGGATCCTGTAATTAAGAATACAATGGACCCCAAACACTTATACCAGGTTGCGGCAGTGGCAGTGTTGTGCGTGCAACCAGAGCCAACTTACCGTCCCCTGATTGCAGATGTTCTCCACTCACTTATCCCTCTTGTCCCCGTAGAGCTTGGAGGAACACTCAAAGTCACACAACTGCCACAGCAAGTCTTACCTGCTAACCCACATGAGGATTCTAGTCCATGA 1356 0.4218 MKTKLLLLLLMLLLVLHKPIWTLASPYPLAPSPQGPPFSPFPNSMSASSPAIVMGAEEQQIDSHKKMVIAIAVASTSLGAVILSVLCIWIYHSKYPSKSKGKNVQRSDAEKGLASSPTLSKFSSIKLVGKKGCVPIIDYKQIEKVTGNYKESNILGEGGFGCVYKAHLADNLEVAVKKLHCENQYAEQEYENEVELLSKIQHPNVISLLGCSSNEDTRIIVYELMHNGSLETQLHGPSHGSALTWHLRMKIALDTARGLKYLHEHCYPPVIHRDLKSSNILLDTKFNAKLSDFGLAITNGTQNKNNIKLSGTLGYVAPEYLLDGKLTDKSDVYAFGVVLLELLLGRKPVEKLAPAQCQSIVTWAMPQLTDRQKLPNIVDPVIKNTMDPKHLYQVAAVAVLCVQPEPTYRPLIADVLHSLIPLVPVELGGTLKVTQLPQQVLPANPHEDSSP* 452
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu1g0480 451 PANTHER OS01G0750732 PROTEIN 48 440 - -
Pvu1g0480 451 ProSitePatterns Protein kinases ATP-binding region signature. 155 178 IPR017441 GO:0005524
Pvu1g0480 451 Gene3D Phosphorylase Kinase; domain 1 111 224 - -
Pvu1g0480 451 SMART serkin_6 149 420 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pvu1g0480 451 Coils Coil 169 189 - -
Pvu1g0480 451 PANTHER BNAA04G14780D PROTEIN 48 440 - -
Pvu1g0480 451 Gene3D Transferase(Phosphotransferase) domain 1 225 424 - -
Pvu1g0480 451 CDD STKc_IRAK 155 422 - -
Pvu1g0480 451 Pfam Protein kinase domain 149 417 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pvu1g0480 451 ProSitePatterns Serine/Threonine protein kinases active-site signature. 270 282 IPR008271 GO:0004672|GO:0006468
Pvu1g0480 451 ProSiteProfiles Protein kinase domain profile. 149 420 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pvu1g0480 451 SUPERFAMILY Protein kinase-like (PK-like) 131 419 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu1g0480 Pvu-Chr1 5122092 5127477 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu1g0480 27 365 Receptor kinase-like Gene Family AT1G80640 48.547 5.76e-98 296
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-X Pvu1g0480 Pkinase 1.4e-49 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu1g0480 - - vra:106764755 816.224
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu1g0480 1 5122092 5127477 Pvu9g0919 9 13917103 13920854 PCT