Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu1g0473 ATGGAAGGAATAAGCAAGAAGGAGGCATACTTTTGTGACAGACCAAGCATGTTCTCTTCTGCTCCGGAGGCACCACCTAGTCCAAGTACTCCACTTCAGCATCCACATGAAAAGAAACAGGTATCTGTTGAGGAAGAAGAGGAAGAAAATAAGGAGTCAAAGCATGCTACCATAGTGGATCTAAATGTTTCAGGTGATGATTCTTGTACTGCAGAAGGACTAGAACTCAACCTCATAACCTGTTTGGATGTGGGGTCATCATCCAATGCCAATTCTTCATCAGAAGCCCCTCTTGGTTCTGATGCTGCTGAGCCAAGAGTGTTCTCTTGCAACTACTGCCACAGAAAGTTCTACAGTTCACAAGCACTAGGGGGCCACCAAAATGCACACAAGAGGGAGAGGTCAATAGCAAAGAGAGGGCACAGGTTTGGATCACAGATAATGGCCTTTGGCCTTCCCTTATTGCATAATAACAACCACTTTGCAAGCATGGCTTCTCTACCCCTTTATGGTGCTAGCAATAATAGAGGAGGAGCTCTTGGAATTCAAGCACACTCTATGATCCAAAAGCCTTCTCATCATCATGTGAGTGGATTTGGAAACTCTTATGCACACCATCACAGTTGGTCAAGACCCATCATTGAACAACAACCTGGAATAGCAAAACTAGCTGTGGCTGATTTTCACAGAACAAAATCAGCATTTTCATCATCACAAACAAGTGTTGGTAGGTTTGAAATGGTTAATACCATGATGAATTCTTCAGCCAAAAAGGAGATCAGTGGATTTGTGGCTAGAGCTGAACCTCGTTTGAAGAGTAATAATCAAGAAGAAATGAAGCACCTTGATTTATCCCTCAAGCTCTAA 867 0.4302 MEGISKKEAYFCDRPSMFSSAPEAPPSPSTPLQHPHEKKQVSVEEEEEENKESKHATIVDLNVSGDDSCTAEGLELNLITCLDVGSSSNANSSSEAPLGSDAAEPRVFSCNYCHRKFYSSQALGGHQNAHKRERSIAKRGHRFGSQIMAFGLPLLHNNNHFASMASLPLYGASNNRGGALGIQAHSMIQKPSHHHVSGFGNSYAHHHSWSRPIIEQQPGIAKLAVADFHRTKSAFSSSQTSVGRFEMVNTMMNSSAKKEISGFVARAEPRLKSNNQEEMKHLDLSLKL* 289
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu1g0473 288 ProSitePatterns Zinc finger C2H2 type domain signature. 110 130 IPR013087 -
Pvu1g0473 288 Gene3D Classic Zinc Finger 97 148 - -
Pvu1g0473 288 MobiDBLite consensus disorder prediction 37 56 - -
Pvu1g0473 288 ProSiteProfiles Zinc finger C2H2 type domain profile. 108 135 IPR013087 -
Pvu1g0473 288 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 14 288 - -
Pvu1g0473 288 MobiDBLite consensus disorder prediction 15 57 - -
Pvu1g0473 288 PANTHER C2H2 AND C2HC ZINC FINGERS SUPERFAMILY PROTEIN 14 288 IPR044246 GO:0009788
Pvu1g0473 288 SUPERFAMILY beta-beta-alpha zinc fingers 105 135 IPR036236 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu1g0473 Pvu-Chr1 5003968 5004834 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu1g0473 27 288 C2H2 Transcription Factor Family AT5G10970 39.033 2.60e-46 155
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Pvu1g0473 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu1g0473 - - gmx:100809569 380.948
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu1g0473 1 5003968 5004834 Pvu9g0914 9 13848370 13849558 PCT