Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu1g0471 ATGACTGTGGTGGAGGATAGAATGGATGAACTCAGAGATGAGTTTCCCATAGGAATGCGTGTTCTTGCTGTTGATGATGACTCAACATGTCTCATGATTCTGGAGACTATGCTTCGAAGGTGCCAATATCATGTAACTACCACTAAAAATGCAAAAACTGCATTGACTCTGTTGAGAGGAAACGAAAACAGGTTTGACCTGGTAATCAGCGATGTACAAATGCCAGACATGGATGGATTTAAGCTGCTTGAACTTGTGGGACTTGAGATGGACCTACCTGTCATAATGATGTCTGTAAATGATGACCCTAAGATGGTGATGAAGGGAATTACACATGGAGCTTGTGATTATCTTCTGAAACCTGTTAGACTTAAGGAGGTACAGAACATTTGGCAGCATGTTGTGAGAAGGAGGACGAGTGATTCGAAGGAGCGGAGCAAAAGCAGCAACCAAGACAAGGCTAATACTGATAGCAATGAAAGAGGTTCTGTAGCAACAGGAAATTCAGATCAAAATGTAAAGTCTTCCAGAAAGAGGAAGGATGAGTCTGACTATGATAACGATGAACAAGAGAATGGCCATGACAATGAGGAGTCATCATGTCATAAGAAAGCTCGAGTTGTTTGGACTGTGGACCTGCACCAAAAGTTTGTTAATGCTGTTGATCAATTAGGCTTTGACAAAGCTGTGCCTAAAAAGATTCTTGACTTGATGAATGTTGAAAAGCTTACAAGGGAGAATGTGGCCAGCCACCTTCAGAAATTTAGGCTTTATCTGAAAAGAAGGAGCTGTGCGGTGAACCGAGAAGCTAATATGGCGGCAGCCTTAGGCACTACAGATTCATCCTTTTTGACAATGGGTTCTCTGAGTGGGGTTGGACATTTGCAGTCACTAACTGGTGCTCAACATTTTCATAACAATACTTTCAGACCCTTTGGATCTGGGGGGATGGCTGGTAGATTGAACACTTCTTTTGGTGTGAATTTGCATGGATTGCCTACTTCAGAAATTCTTCATTTGGGCCATGCACATAATTTTCACAAATCTATTCATGAACCACTTAAGTTCCAACAAGCCATAATTGGTGGTAATCAGAATGTTATTCAGGGAATGCCAATGTCTACAGGTCTTGATCAATTTCAACGTAAGGGTGTGAACATTGGTGTTAGACCGATTCAAAGCATTTCCCCTTTTCTTGATGTTCAACCAAATTTTTCCTTGTCAAATAAACTCCCAGATCTGATGCCAAAATCAACAATGGGTTGCTCAGCCTCTCCAGTTTTGGACGTCTCAAACAATGCTTTGGTATTGAAAGCTGATGGTGAAAACACACAAGGGGGTGGATTGATATTTGGTCAAACTTCATTAGCCTCTCAGAATTCACAATTCTCAATGCCTTTGTTGGATCAGGGTAGGTGTAGTGATATTTGGTCAAATACTGTTCAGTCATCTGGGACAAATTCTTACCCTCCAACTGAAACTTTTCAATGGAGGAATCTGAGTGGTGCTTCATCCATTACTTCACTGTCTAACCAATCCCTTGATTCACTAAAAGATATGCATTCTCAAGGAGTTCTTTTTGCAAATAATTCAGGACAAATAAGCAATAGTGTGGTGCCATTTCAAGGGTGGGATGACAACAATGATGATAGTTCTTTCCCTTCAACTATTTTTGGTAACTCAGTAGACTCTCTGATTGATACAGATGGCCACACTTCTATTAACTCAATCTACAACAAAAACACGGACTTCAGTTTCTTTGAATTACGGGATTGA 1776 0.4071 MTVVEDRMDELRDEFPIGMRVLAVDDDSTCLMILETMLRRCQYHVTTTKNAKTALTLLRGNENRFDLVISDVQMPDMDGFKLLELVGLEMDLPVIMMSVNDDPKMVMKGITHGACDYLLKPVRLKEVQNIWQHVVRRRTSDSKERSKSSNQDKANTDSNERGSVATGNSDQNVKSSRKRKDESDYDNDEQENGHDNEESSCHKKARVVWTVDLHQKFVNAVDQLGFDKAVPKKILDLMNVEKLTRENVASHLQKFRLYLKRRSCAVNREANMAAALGTTDSSFLTMGSLSGVGHLQSLTGAQHFHNNTFRPFGSGGMAGRLNTSFGVNLHGLPTSEILHLGHAHNFHKSIHEPLKFQQAIIGGNQNVIQGMPMSTGLDQFQRKGVNIGVRPIQSISPFLDVQPNFSLSNKLPDLMPKSTMGCSASPVLDVSNNALVLKADGENTQGGGLIFGQTSLASQNSQFSMPLLDQGRCSDIWSNTVQSSGTNSYPPTETFQWRNLSGASSITSLSNQSLDSLKDMHSQGVLFANNSGQISNSVVPFQGWDDNNDDSSFPSTIFGNSVDSLIDTDGHTSINSIYNKNTDFSFFELRD* 592
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu1g0471 591 MobiDBLite consensus disorder prediction 136 201 - -
Pvu1g0471 591 PANTHER TWO-COMPONENT RESPONSE REGULATOR 1 571 IPR045279 GO:0009736
Pvu1g0471 591 MobiDBLite consensus disorder prediction 173 187 - -
Pvu1g0471 591 Gene3D - 18 157 - -
Pvu1g0471 591 SUPERFAMILY Homeodomain-like 201 261 IPR009057 -
Pvu1g0471 591 SUPERFAMILY CheY-like 18 143 IPR011006 -
Pvu1g0471 591 ProSiteProfiles Response regulatory domain profile. 20 135 IPR001789 GO:0000160
Pvu1g0471 591 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 203 260 IPR017930 -
Pvu1g0471 591 PIRSF RR_ARR_type-B 1 589 IPR017053 GO:0003677|GO:0003700|GO:0009736
Pvu1g0471 591 CDD REC_typeB_ARR-like 21 135 - -
Pvu1g0471 591 Pfam Myb-like DNA-binding domain 206 254 IPR001005 -
Pvu1g0471 591 MobiDBLite consensus disorder prediction 136 151 - -
Pvu1g0471 591 MobiDBLite consensus disorder prediction 152 172 - -
Pvu1g0471 591 PANTHER TWO-COMPONENT RESPONSE REGULATOR 1 571 - -
Pvu1g0471 591 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 204 257 IPR006447 GO:0003677
Pvu1g0471 591 SMART REC_2 19 131 IPR001789 GO:0000160
Pvu1g0471 591 Pfam Response regulator receiver domain 21 128 IPR001789 GO:0000160
Pvu1g0471 591 Gene3D - 200 262 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu1g0471 Pvu-Chr1 4959782 4964285 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu1g0471 3 381 Response Regulator Gene Family AT2G25180 56.041 6.44e-126 381
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-ARR-B Pvu1g0471 Response_reg 2.3e-23 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu1g0471 - K14491 var:108336977 915.99
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu1g0471 1 4959782 4964285 Pvu9g0913 9 13831002 13833440 PCT