Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu1g0469 ATGAGTACCTCATCCAAATGTAGACCCCGTTACAGCTTCTATGAGTTAGATGAGGAGGATCAAGTTATATCCCCTAGAAAACATGGGAAATCTACAGAAAAAGATGTGGAAATTGATGGAAATGATACTAATGTTGAAGGGCTTCGTGGAAGATCGAGTCAAAGGAAGAAAAAATACACTATTGATGATTCTGATGACGACGATTCAGTTATTCTCCCTAGGAAACGTGGGAGACCTAAACAAAAAAACAAGAAAATTGATACAAGTGACACTGCTAGCCCAATGAATGGTATTGATAAGATATTAGATTGTGAGATGCGTTCTGTGGTAGCAGCTGGTGAGAGTGATGCAACAAAGTTGGAGTCAAAGCAGACTCTTGTCAAGCAATATCTTGTTAAGTGGAAGGGACTCTCATATTTGCACTGCACATGGGTTCCCGAGGAAGAGTTTTTGAAGACTTACAAGACTCAGCCGGGTCTAAAGATCAAAGTAAACAGCTTCCATCGTCGTATGGCAGCAGCCAAGAATCCTAATGAAGATTTTGTTCCCATTAGATCTGAATGGACTATGGTTGATCGAATAATTGCTTGCAGTGGTAGCGATGACAAGAAGGAATATCTTGTGAAGTGGAAAGAGCTTCCATACGATGAGTGCTATTGGGAGCTGGAGGCAGATATCTCTGCATTTCAAACAGAAATAGAAAGATTCAACACATTTCAGTCTAGATCAAGGAAAGTTTCGTCTAGTAAGAAAAGTAGTATTCAGTTTGGTTCTGAATCGAATAATCTGCAGAAAGAGTTTTTGCAGTACGAAAGTAGTCCACAATTTCTTTCAGGGGGTTCACTGCATCCCTATCAGCTTGAAGGATTGAACTTCTTACGATTTTCATGGTCCAAGCAAACTCATGTTATACTTGCTGATGAAATGGGACTTGGAAAAACCATTCAAAGTATTGCTTTCTTAGCATCTCTTTTTGAAGAGAATGTTTCTCCACATCTGGTGGTTGCTCCGCTTTCAACATTAAGAAACTGGGAACGTGAGTTTGCAACTTGGGCACCTCACATGAATGTGGTTATGTATTTTGGATCTGCTAATGCTCGTGCTATAATCAGAGAGTATGAGTTTTACTTTCCGAAGAATCAAAATGTGAAAAAGAAAAATAAATCTAAAAAGAGTGTTTATGACAGCAAACAAGGAAGGATAAAGTTTGATGTCCTTTTGACTTCATATGAGATGATAAATTCTGATTCATCATCTTTGAAACCTATAAAGTGGGAGAGCATGATAGTTGATGAGGGTCACCGTCTCAAAAACAAAAATTCTAGATTGTTTTCTGCTTTGAAGCAATATTCCACCAAACATCGTGTGCTTTTGACTGGAACTCCTCTTCAGAACAATTTGGATGAACTTTTTATGCTTATGCACTTCCTTGATGCTGGAAAGTTTGGAAGTTTAGAGGAGTTCCAGGAAGAGTTTAAGGATATCAACAGAGAGGAGCAGATTTTGAGACTGCATAAAATGCTGGCACCACATCTCTTGCGAAGAATGAAGAAGGATGTGTTGACGGAACTACCTCCAAAAAAGGAACTTATTTTACGTGTTGAATTAAGCAGTCTACAGAAAGAATACTATAAGGCAATTTTGACACGTAATTATGAGATATTAACCCGCCAAGGTGGTGCACAAATTTCTCTTATCAATGTTGTTATGGAACTGCGTAAGCTGTGCTGCCACCCCTTCATGTTACAAGGAGTTCAACCTGTTCTTAATGATGACAATCAGGCACATGAGCAATTACTTGAATCATCTGGGAAGTTGCAATTGTTAGACAAGTTGATGGTGAAACTTAAAGTGCAAGGTCATAGAGTCCTTATATATTCCCAATTTCAGAGAATGCTTGACTTGCTGGAAGATTACTGTTCTTATAGGCAATGGCAATATGAGAGGATAGATGGCAAGGTTGGAGGTGCTGAAAGACAAGTAAAGATAGATTTGTTCAATGCTGAAGATTCTTCAAGATTTTGTTTCCTTCTATCTACAAGAGCTGGGGGGTTGGGGATAAACCTTACTACAGCTGACACAGTTATTCTATACGACAGCGACTGGAACCCTCATGCTGATTTGCAAGCCATGGCCAGGGCGCATCGCCTTGGGCAAACGAGGAAGGTCATGGTGTATAGGCTTATAACAAGGGGAACAATTGAAGAGAAGATGATTCAGATGACCAAAAAGAAAATGGTCTTAGAACACCTTGTTGTAGGGAAGCTGCAGTCTGAAAACATCAAGCAGGAGGAGCTAGATGATATTGTAAGATACGGCTCAGAAGAGTTATTTGCTGATGAAAATGATGAAGCAGGCAAATCTCGCCAAATTCATTACGATGCTGATGCAATCGATAGGTTGCTGAATCGTGATGAAGTTGGTAATGAAGAGGCGCCTGCTTTGGATGGTGAAGATGAAGATGGATTTCTGAAGGCCTTCAAGGTAGCAAATTTCGAATACATCGAGGAGGCTGAGGTAGCAGAGGAGGTGGCAGAAAATGTAGCAACTGAGAATCAATCCTCTGCTGCCAGTTTGAAAAAAGCAAATCACTGGGAAGAGCTGTTGAAAGAAAGATATGAACAACAGAGAGCTGAAGAGTTAAATGCCTTAGGCAAAGGGAAGCGAACCTGCACCAAGTGGCAGGGAGAAGGCTCTACTCGTTGGGGAGATCTAAGCTCCGATGGTGAAGATGTTAAAGATGACAATTATGAAGTGGATCTTAGTGAGGATGATTCCATTTCATTTGATACTACCACAAGGCCTCACAAAACCAAACCTCACAAAACCAAAGATCGCGAGAGCCCTGAGCCACTTCCAGTAATGGAAGGGAAAGGAAGATCGCTGAAAGTACTTGGTTTTAGTCGAAATCAAAGGGCTGATTTTGTTCAAATTTTAATGAGATTTGGAGTGGGTGATTTTGACTGGTCAGACTTTACTGCCCGCATGAAACAGAAGAGTTTTGAAGAAATCCACATGTATGGACAACTCTTTTTGTCTCACATTGCGGAAGAAATTACTGATTCCCCTACATTCACAGATGGAGTTCCAAAAGAAGGACTTCAAATACCAGATGTGCTTGTAAGGATTGCAGCTCTGCTCCTTCTAAGAGAGAAAGTGAAGTTTATATCAGAAAATCCTGAAACTCCACTTTTCTCAGATGATATCTTATCACGCTATCCAGGTCTGAAGGCTACAAAGATCTGGAAGGAGGAGCACGATGTAGTGCTACTGCATGCCATGTTGAAGCATGGTTATGAAAGGTGGCATGATATTGCTGAAGATAAGGATCTGAATCTTCAGAAGGTTATCTGTCAGGAGTTGAATATTCCAGTTCTACAGTCTGATGTGACAAATGTGCAGTCTAGCTGCCCCCCATCCGGTGAGAATGTTAGGAGTGACATTGCTGCTGACGGTGCAAATATGACAAACGTGGAATCGAGCTTCACCAAATCTAAGAAGAGTGTTTCGCGTGGTTCTAGTCATCGTCGGAAGCAAGTCCAAGCATTCCGTAAGTCTGTGGTGGGGCATGACTATAAACAAATTCAGAAAGCACAGACTGAGTTTATAAAGAAAAGGTTTCGTCTCTTGGAAAAAGGTCTCAACGCTGAGTGCCAAAAAGAATACTATGGCACGCGAGTAGATGTCACAGAGAATATCGCCTCTGAGACTGACGAAAGTGTGGCTGATCATCTGCCTCAAGTCAAAGGAATTGACACAGAGGATATTTATACTTCTGCATGTGACTTTGAACAAGATCGCCTGCAATTAGTATCTCTCTACAATGAGATGTGCTCAACTGTGGAGGAAAGCGCCATGGGTTTAGTCGAAACGGCAACAGACCAGGCACAACAGCAGGCTATTCAGAACTTGGGTCTACTCCAAAGCATTTCTGCAGATATCAATACAATTCTAAATGGTAAAGATATTGCAGATTAA 3978 0.4093 MSTSSKCRPRYSFYELDEEDQVISPRKHGKSTEKDVEIDGNDTNVEGLRGRSSQRKKKYTIDDSDDDDSVILPRKRGRPKQKNKKIDTSDTASPMNGIDKILDCEMRSVVAAGESDATKLESKQTLVKQYLVKWKGLSYLHCTWVPEEEFLKTYKTQPGLKIKVNSFHRRMAAAKNPNEDFVPIRSEWTMVDRIIACSGSDDKKEYLVKWKELPYDECYWELEADISAFQTEIERFNTFQSRSRKVSSSKKSSIQFGSESNNLQKEFLQYESSPQFLSGGSLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFEENVSPHLVVAPLSTLRNWEREFATWAPHMNVVMYFGSANARAIIREYEFYFPKNQNVKKKNKSKKSVYDSKQGRIKFDVLLTSYEMINSDSSSLKPIKWESMIVDEGHRLKNKNSRLFSALKQYSTKHRVLLTGTPLQNNLDELFMLMHFLDAGKFGSLEEFQEEFKDINREEQILRLHKMLAPHLLRRMKKDVLTELPPKKELILRVELSSLQKEYYKAILTRNYEILTRQGGAQISLINVVMELRKLCCHPFMLQGVQPVLNDDNQAHEQLLESSGKLQLLDKLMVKLKVQGHRVLIYSQFQRMLDLLEDYCSYRQWQYERIDGKVGGAERQVKIDLFNAEDSSRFCFLLSTRAGGLGINLTTADTVILYDSDWNPHADLQAMARAHRLGQTRKVMVYRLITRGTIEEKMIQMTKKKMVLEHLVVGKLQSENIKQEELDDIVRYGSEELFADENDEAGKSRQIHYDADAIDRLLNRDEVGNEEAPALDGEDEDGFLKAFKVANFEYIEEAEVAEEVAENVATENQSSAASLKKANHWEELLKERYEQQRAEELNALGKGKRTCTKWQGEGSTRWGDLSSDGEDVKDDNYEVDLSEDDSISFDTTTRPHKTKPHKTKDRESPEPLPVMEGKGRSLKVLGFSRNQRADFVQILMRFGVGDFDWSDFTARMKQKSFEEIHMYGQLFLSHIAEEITDSPTFTDGVPKEGLQIPDVLVRIAALLLLREKVKFISENPETPLFSDDILSRYPGLKATKIWKEEHDVVLLHAMLKHGYERWHDIAEDKDLNLQKVICQELNIPVLQSDVTNVQSSCPPSGENVRSDIAADGANMTNVESSFTKSKKSVSRGSSHRRKQVQAFRKSVVGHDYKQIQKAQTEFIKKRFRLLEKGLNAECQKEYYGTRVDVTENIASETDESVADHLPQVKGIDTEDIYTSACDFEQDRLQLVSLYNEMCSTVEESAMGLVETATDQAQQQAIQNLGLLQSISADINTILNGKDIAD* 1326
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu1g0469 1325 SMART helicmild6 634 718 IPR001650 -
Pvu1g0469 1325 Gene3D - 274 524 IPR038718 -
Pvu1g0469 1325 Pfam CHD subfamily II, DUF1087 841 890 IPR009463 -
Pvu1g0469 1325 CDD CD2_tandem 187 236 - -
Pvu1g0469 1325 Gene3D - 525 749 IPR027417 -
Pvu1g0469 1325 PANTHER CHD3-TYPE CHROMATIN-REMODELING FACTOR PICKLE 8 1056 - -
Pvu1g0469 1325 SUPERFAMILY Chromo domain-like 85 171 IPR016197 -
Pvu1g0469 1325 PANTHER CHROMODOMAIN-HELICASE-DNA-BINDING PROTEIN 3-RELATED-RELATED 8 1056 - -
Pvu1g0469 1325 CDD CD1_tandem 96 169 - -
Pvu1g0469 1325 SMART DUF1087_2 839 914 IPR009463 -
Pvu1g0469 1325 Pfam CHD subfamily II, SANT-like domain 937 1067 IPR009462 GO:0003677|GO:0006338
Pvu1g0469 1325 MobiDBLite consensus disorder prediction 923 955 - -
Pvu1g0469 1325 SMART ultradead3 278 491 IPR014001 -
Pvu1g0469 1325 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 272 515 IPR027417 -
Pvu1g0469 1325 MobiDBLite consensus disorder prediction 18 94 - -
Pvu1g0469 1325 Gene3D - 184 238 - -
Pvu1g0469 1325 ProSiteProfiles Chromo and chromo shadow domain profile. 189 251 IPR000953 -
Pvu1g0469 1325 SMART chromo_7 187 241 IPR000953 -
Pvu1g0469 1325 SMART chromo_7 95 159 IPR000953 -
Pvu1g0469 1325 Coils Coil 485 505 - -
Pvu1g0469 1325 MobiDBLite consensus disorder prediction 18 75 - -
Pvu1g0469 1325 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 294 480 IPR014001 -
Pvu1g0469 1325 CDD SF2_C_SNF 603 729 - -
Pvu1g0469 1325 SUPERFAMILY Chromo domain-like 175 241 IPR016197 -
Pvu1g0469 1325 MobiDBLite consensus disorder prediction 927 953 - -
Pvu1g0469 1325 Gene3D - 85 183 - -
Pvu1g0469 1325 Pfam Chromo (CHRromatin Organisation MOdifier) domain 190 237 IPR023780 -
Pvu1g0469 1325 Pfam Chromo (CHRromatin Organisation MOdifier) domain 122 153 IPR023780 -
Pvu1g0469 1325 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 608 767 IPR001650 -
Pvu1g0469 1325 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 517 773 IPR027417 -
Pvu1g0469 1325 SMART DUF1086_2 919 1070 IPR009462 GO:0003677|GO:0006338
Pvu1g0469 1325 ProSiteProfiles Chromo and chromo shadow domain profile. 96 179 IPR000953 -
Pvu1g0469 1325 Pfam SNF2-related domain 302 581 IPR000330 GO:0005524|GO:0140658
Pvu1g0469 1325 Pfam Helicase conserved C-terminal domain 605 718 IPR001650 -
Pvu1g0469 1325 Gene3D - 1037 1221 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu1g0469 Pvu-Chr1 4916221 4928414 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu1g0469 603 769 RAD5 or RAD16-like Gene Family AT5G43530 36.095 1.50e-24 110
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Pvu1g0469 SNF2_N 3.4e-64 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu1g0469 K11643 - gmx:100804203 1632.46
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu1g0469 1 4916221 4928414 Pvu9g0910 9 13806037 13826919 PCT