Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu1g0467 ATGGCAAACTTCCACCGTAACAACGTCGAGCATGTGGTCCTCGGCCACCACCGTTCCAAGAGCACCTCCGTCACCGGTGGCCACTTCCGCCTATGGCACTCCCTCTCCACGGCCTCCTTCCGCCGCCTCGTCTTCGATGCTGTCAGCTGCGGTGCCAGCTCCCGCTACACTGTGAGATCCGACACGTCCTCCGAGAGACACCACCACCAACCGAAACAACAGCTCCAGCACAAGAGGAAGCCGAATAACACGAAGTCGGAGAAGCTTTCGGATCTGCTGAACCTCGCGGAGGTCGAGGCTGACGCGGAAACGAAGAAGAAAGAGGACAAGCTCGAGGAGCTGAAGAGCCTGGTGAAGGAGCTTCAGAAGGAAGACGAGGAAGAGAAAGAAGAAGAATCAATGACGCGGAGAAGAGAAGCTGCTTCGAAAATGAGGTTGCTGGCGAAAGAGGATTTGGAAGTTAGAGGAACGCTTGCTATGCTTGGAGCTATTCCTACTCTCGTCGCAATGCTCGATGAATGCAAAAACGATGTCGATTCGCTAGTGGCTTCTCTCTACGCCCTGCTCAACCTCGGAATCGGAAACGACGCGAATAAATCAGCTATTGTGAAAGTTGGATCGGTTGAGAAGATGCTGAACCTGATTGAATCTCGGGATGGTCTAGATTCTTCGGTTTCTGAAGCAATTGTGGCTAATTTCCTTGGACTTAGTGCTTTGGATTCAAATAAGCCCATAATTGGGTCTTCGGCTTCAATTTCTTTCTTAGTTAAAACCCTTCAGAGTTTAGACGACAATAGAAGTCCCCAAGCCAAGCAAGATGCTCTAAGGGCATTGTACAATCTTTCTATCTACCCAGGCAACGTTGCATTCGTTTTGGAAACAGATTTGGTTCTGTTTCTGGTGAACTCAATAGGGGACATGGAGATAACTGAAAGAGCTCTTGCAATTCTCAGCAACTTGGTGTCGACCCGAGATGGTAGAAAGGCGATTGGTGTAGTGCAAGATTCGATTCCAATCCTGGTGGATGTGTTGAATTGGACAGATTCGCCAGAATGCCAAGAGAAGGCATCGTACATTTTGATGGTTATGGCACACAAATCCTATAGGGACAAACAGGCCATGATTGAGGCAGGGATTGCGTCATCACTGCTTGAGTTGTCCCTTTTGGGTACCACATTAGCTCAGAAAAGGGCATCAAGGATACTGGAAATATTGAGGGTGGACAAAGGGAAACAGATTTCTGGGAGCTATGCCTTGGGTGCTGCTGTCTCTGCCCCTATTTGCGGCTCTTCGTCCAAGCCGGATGACGGAGGAAGGGAGTGTTTTGACGAGGAGGAAGATATGATGAGTGAGGAGAAGAAAGCAGTGAAGCAATTAGTCCAGCAGAGTTTGCAGAACAACATGAGGAAAATTGTAAAAAGGGCCAATTTGCCTCACGATATTGTTCCATCCGATCATTTTAAGTCACTCACCTCAAGTTCTACTTCAAAGAGCCTACCATTTTGA 1506 0.4854 MANFHRNNVEHVVLGHHRSKSTSVTGGHFRLWHSLSTASFRRLVFDAVSCGASSRYTVRSDTSSERHHHQPKQQLQHKRKPNNTKSEKLSDLLNLAEVEADAETKKKEDKLEELKSLVKELQKEDEEEKEEESMTRRREAASKMRLLAKEDLEVRGTLAMLGAIPTLVAMLDECKNDVDSLVASLYALLNLGIGNDANKSAIVKVGSVEKMLNLIESRDGLDSSVSEAIVANFLGLSALDSNKPIIGSSASISFLVKTLQSLDDNRSPQAKQDALRALYNLSIYPGNVAFVLETDLVLFLVNSIGDMEITERALAILSNLVSTRDGRKAIGVVQDSIPILVDVLNWTDSPECQEKASYILMVMAHKSYRDKQAMIEAGIASSLLELSLLGTTLAQKRASRILEILRVDKGKQISGSYALGAAVSAPICGSSSKPDDGGRECFDEEEDMMSEEKKAVKQLVQQSLQNNMRKIVKRANLPHDIVPSDHFKSLTSSSTSKSLPF* 502
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu1g0467 501 SMART arm_5 324 365 IPR000225 GO:0005515
Pvu1g0467 501 SMART arm_5 151 193 IPR000225 GO:0005515
Pvu1g0467 501 SMART arm_5 239 283 IPR000225 GO:0005515
Pvu1g0467 501 SMART arm_5 284 322 IPR000225 GO:0005515
Pvu1g0467 501 SMART arm_5 195 238 IPR000225 GO:0005515
Pvu1g0467 501 MobiDBLite consensus disorder prediction 481 501 - -
Pvu1g0467 501 PANTHER ARM REPEAT SUPERFAMILY PROTEIN 1 501 - -
Pvu1g0467 501 MobiDBLite consensus disorder prediction 486 501 - -
Pvu1g0467 501 Coils Coil 93 138 - -
Pvu1g0467 501 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 162 206 IPR000225 GO:0005515
Pvu1g0467 501 Coils Coil 442 462 - -
Pvu1g0467 501 Gene3D - 81 472 IPR011989 -
Pvu1g0467 501 PANTHER ARMADILLO/BETA-CATENIN-LIKE REPEAT PROTEIN 1 501 - -
Pvu1g0467 501 MobiDBLite consensus disorder prediction 56 92 - -
Pvu1g0467 501 SUPERFAMILY ARM repeat 113 405 IPR016024 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu1g0467 Pvu-Chr1 4866808 4870189 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu1g0467 76 406 U-box Gene Family AT2G23140 31.928 5.85e-32 127
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu1g0467 - - gmx:100808483 680.248
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu1g0467 1 4866808 4870189 Pvu9g0905 9 13765724 13767835 PCT