Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu1g0460 ATGTCGTCGGTTTACGTTCTAGAACCTCCGACGAAGGGGAAAGTGGTACTGAGCACCACGCGCGGGCCTTTGGACATCGAGCTATGGCCGAAGGAGGCTCCGAAAGCCGTGAGGAACTTCGTGCAGCTCTGCCTCGAAAACTATTATGACGACACCATCTTCCACCGCGTCATCAAGGACTTCCTCGTCCAAACCGGCGATCCCACCGCCTCCGGCACCGGAGGTGAAAGCATTTATGGTGGTGTTTTTGCTGATGAGTTTCATTCTCGTTTGAAATTCAAGCACAGAGGAATAGTTGCGATGGCAAGTTCTGGATCTCCAAATTCCAATGGAAGTCAGTTTTTCATCACTCTCGACCGTTGTGACTGGCTTGATCGCAAGCATACAATTTTTGGAAAAGTGACAGGAGATACAATGTATAATCTTTTGAGACTGGGTGAAGTTGAAACTGATAAGAATGACCGGCCTTTAGATCCGCCAAAGATTTTATCAGTTGAGGTGTTATGGAATCCATTTGAAGATATTGTTCCAAGAACACTCCAGAAATCACAAACTGAAGCTAGAGTTGATGCTGAAAGTAAAGAGCAGAAGAAGAAAGGTGTAAAAAAATTGAACTTGCTTTCATTTGGGGAAGAAGCTGAAGAAGATGAAAAGGAATTGGCATCGGTGAAGCAAAAGATTAAGAGCAGTCACGATGTCTTGAACGATCCTCGTCTTCTAAAGGAAGAAACACCTGATGGCGAACTGAGTTCGTCAAGAAGAGATCTGCAGTTGTCTGTTAGGGAGACACTTAACTCTAAGAAAGAAGAGCCTCAGAAAGATTCAGCACCTGGTAACATTGCTCGTCTTGATTCCAGTGATGATGATGAAGCAGATTTTGATTCAAGAATGCGCATGCAGATACTCAAAAAGCGGAAGGAGTTGGGTGATCTCCCTCCAAAGTCCAAGTTGCAAAAAGGAGGAGGAAGGTCGATTCCAGAGAATCATGATACGTCAGCACCAAGGTCCAATGCTGTCAGTGCTGATGAGGATCAACCAAAGGTGGAAAAGTTGTCCATGAAGAAAAAGGGAGTAGGATCTGAAGCAAGAGCTGAACGAATGGCTAATGCAGATGCAGATCTGCAACTATTAAATGAAACTGAGAGAGGAAGACAATTGCAGAAGCAGAAGAAACGCCGACTTCAGGGGCGCGAAGATGAAGTTCTGGCTAAACTTCAAAAATTTAAGAGTTCTTTAGCAGCAAAGGAGACACCCCCTGCAGGCAAATCTGGAGATGTTAACAGTGAGTTGTCTGACTGGAAAGGTGTCAGTTTAAAATTTGACCCCGAGTCTGGCAAGGACCGCATGTCACGCAATGAGGACCCAAATGACTATGTTGTGCACGACCCACTTCTGGAAAAGGGGAAAGAGAAGTTTAATAGGATGATGGCCAAACAAAAGAGACGAGAACGAGAGTGGGCTGGGAGATCTCTTACTTGA 1479 0.4517 MSSVYVLEPPTKGKVVLSTTRGPLDIELWPKEAPKAVRNFVQLCLENYYDDTIFHRVIKDFLVQTGDPTASGTGGESIYGGVFADEFHSRLKFKHRGIVAMASSGSPNSNGSQFFITLDRCDWLDRKHTIFGKVTGDTMYNLLRLGEVETDKNDRPLDPPKILSVEVLWNPFEDIVPRTLQKSQTEARVDAESKEQKKKGVKKLNLLSFGEEAEEDEKELASVKQKIKSSHDVLNDPRLLKEETPDGELSSSRRDLQLSVRETLNSKKEEPQKDSAPGNIARLDSSDDDEADFDSRMRMQILKKRKELGDLPPKSKLQKGGGRSIPENHDTSAPRSNAVSADEDQPKVEKLSMKKKGVGSEARAERMANADADLQLLNETERGRQLQKQKKRRLQGREDEVLAKLQKFKSSLAAKETPPAGKSGDVNSELSDWKGVSLKFDPESGKDRMSRNEDPNDYVVHDPLLEKGKEKFNRMMAKQKRREREWAGRSLT* 493
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu1g0460 492 MobiDBLite consensus disorder prediction 439 463 - -
Pvu1g0460 492 ProSitePatterns Cyclophilin-type peptidyl-prolyl cis-trans isomerase signature. 49 66 IPR020892 GO:0003755|GO:0006457
Pvu1g0460 492 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 28 43 IPR002130 GO:0000413|GO:0003755
Pvu1g0460 492 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 54 66 IPR002130 GO:0000413|GO:0003755
Pvu1g0460 492 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 98 113 IPR002130 GO:0000413|GO:0003755
Pvu1g0460 492 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 113 125 IPR002130 GO:0000413|GO:0003755
Pvu1g0460 492 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 126 141 IPR002130 GO:0000413|GO:0003755
Pvu1g0460 492 CDD cyclophilin_CeCYP16-like 8 179 - -
Pvu1g0460 492 Gene3D - 2 182 IPR029000 -
Pvu1g0460 492 MobiDBLite consensus disorder prediction 260 275 - -
Pvu1g0460 492 MobiDBLite consensus disorder prediction 342 368 - -
Pvu1g0460 492 MobiDBLite consensus disorder prediction 225 250 - -
Pvu1g0460 492 Pfam Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD 15 167 IPR002130 GO:0000413|GO:0003755
Pvu1g0460 492 ProSiteProfiles Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain profile. 22 167 IPR002130 GO:0000413|GO:0003755
Pvu1g0460 492 PANTHER SPLICEOSOME-ASSOCIATED PROTEIN CWC27 HOMOLOG 5 202 - -
Pvu1g0460 492 SUPERFAMILY Cyclophilin-like 14 184 IPR029000 -
Pvu1g0460 492 MobiDBLite consensus disorder prediction 283 313 - -
Pvu1g0460 492 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE-RELATED 5 202 IPR044666 -
Pvu1g0460 492 MobiDBLite consensus disorder prediction 225 463 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu1g0460 Pvu-Chr1 4772363 4781592 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu1g0460 9 172 U-box Gene Family AT5G67530 46.341 3.17e-41 154
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu1g0460 K12737 - gmx:100793148 822.002
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu1g0460 1 4772363 4781592 Pvu1g0460 1 4772363 4781592 ECH