Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu1g0459 ATGTCTTCTCATGGTGGCGCAGCCACATCACAACTGTTCAATGTAACCATGGTGGCGGTTGACAAGGGCAAGAGCAGTGGCCACGCCTTTCGATGGACCTTAAAAAACATAGACAACCCCGTCATCATCGCAGTCCATGTCAAACACAAAAACATTCCTCATCAGGGCACCAATGTTTTTCCTCCCACCGAAGACGAAGTAGCCAATGTTTTCAACCCCATACGTCAATTGTGTCAAAACAACAACGTTAAGTTGAAAGAAGCTGTAATCGATGACAGTGAGGTTGTGAGAGGAATAGTGGAATATGCAAAGAAAAATCGCGTGAATACTATAGTCATTGGTGCAGCCCACTCTAACAAGAATACTTTGGCAAGGACTCTTTACCTGAGGAGTGGAAGCAAAAAATTAAAAGGCCTTGTGCCAACAGGCGTAATGAAATCAGCACCAGATCATAGTTCAGTGTATGTGATTTCAAAAGGGAAGATACTGGGAGCTCGACCAGCAATACGACCAATGGTAAACATGGTTACACCACCAAGTGAAAATGGAATAAGTGAGAACAGGGCAAATGCACATAGAACTGGGAGCACCAATGGAAGATCAGAAAGATCACCTCTACTTGAAATGCCAAGGTCTTCTTCAGTTGGTCAATCAACGGATCGCAGGTTACTATTTTGTCGCAGCACAGGTGAAAGTGACTCTTCAAGGTCACACAAGTTAGGGTCAGCAGCAGATGGAACTAAAAAAGAGTACGATTCAGACTCTCCATCAGATTCTCAATTCACAGCAGAGATGGAAAGTGAGATGAAAAGGCTGAGGCTCAAACTGAAGCAAACTATGGACTTGTACAATTCAGCTTGCAAAGAAACAGTGTCAACCCAAAGCAAGGATAAAGAGATTAACCAACGGAAACTGGACGAGGAACGTATAGCTGAGGTGGCTAAGTTGTCTAAAGAGGCAGCTCTTGCAATGGCAGAAAAGGAGAAATTTAAAGCCAGAGCTGCATTGGAAGCAGCTGAGGAAGCCATTAAGATGGTTGAAAAGGAAGCACAGAGAAGATTTCATGCAGAGATGAAGGCCAGAAGAGAGGCACATGAAAAGGATAGAGCATTGAATCAGTTGGCATGCAGGGATATTCGATGCAGAAAATACACTATAAACGATGTTGAAGGGGCCACTAGAAAGTTCTGCCAAACATTGAAAATAGGTGAAGGTGGATATGGACCTGTGTTTAAAGGCCAACTTGATCACACCCAAGTAGCAATCAAAATTTTGAACCCTGATGCTACCCATGGCAGGAGGCAGTTCCAACAAGAGGTTGAGGTATTATGCAGCATAAGGCATCCAAACATGGTTCTCCTCATTGGTGCATGTCCTGAATATGGATGTTTAGTGTATGAGTACTTAGAGAATGGTAGCTTAGAAGATAGATTATTGATGAAAAATGATAGTCCTCCAATTCCATGGTGGAAACGTTTTGAAATAGCTGCTGAGATTGCAACTGCGCTCCTTTTCCTTCACCAAACAAAGCCAGAACCAATTGTGCACAGGGACCTCAAACCTGCCAACATTCTCTTGGACAAGAATTTTGTGAGCAAAATTAGTGATGTTGGTCTTGCAAGACTAGTGCCAGCTTCTGTGGCTGATTCTGTCACACAATATCACTTGACTGCTGCTGCAGGAACCTTTTGTTACATTGACCCTGAGTACCAACAATCTGGGATGCTAACAACAAAATCAGACGTATATTCATTGGGGATAATGCTTCTACAAATCATCACAGCCAAGCCTCCAATGGGGCTTGCTCACCATGTTATGAGGGCCATTCAAGAGGGAACATTTTCAGAAATGCTTGATCCTGTGATCACTAATTGGCCCCTTGAAGAGACTCTTGAATTTGGCAAACTCTCATTGAGTTGTGCAGAGCTCAGCAAAAGGGACAGGCCTGATCTTGCAACTGAGATAGTGCCAAAGCTTAACCATTTGAGGGACTTTGGGTTAGCATCACAATCATAG 2016 0.4345 MSSHGGAATSQLFNVTMVAVDKGKSSGHAFRWTLKNIDNPVIIAVHVKHKNIPHQGTNVFPPTEDEVANVFNPIRQLCQNNNVKLKEAVIDDSEVVRGIVEYAKKNRVNTIVIGAAHSNKNTLARTLYLRSGSKKLKGLVPTGVMKSAPDHSSVYVISKGKILGARPAIRPMVNMVTPPSENGISENRANAHRTGSTNGRSERSPLLEMPRSSSVGQSTDRRLLFCRSTGESDSSRSHKLGSAADGTKKEYDSDSPSDSQFTAEMESEMKRLRLKLKQTMDLYNSACKETVSTQSKDKEINQRKLDEERIAEVAKLSKEAALAMAEKEKFKARAALEAAEEAIKMVEKEAQRRFHAEMKARREAHEKDRALNQLACRDIRCRKYTINDVEGATRKFCQTLKIGEGGYGPVFKGQLDHTQVAIKILNPDATHGRRQFQQEVEVLCSIRHPNMVLLIGACPEYGCLVYEYLENGSLEDRLLMKNDSPPIPWWKRFEIAAEIATALLFLHQTKPEPIVHRDLKPANILLDKNFVSKISDVGLARLVPASVADSVTQYHLTAAAGTFCYIDPEYQQSGMLTTKSDVYSLGIMLLQIITAKPPMGLAHHVMRAIQEGTFSEMLDPVITNWPLEETLEFGKLSLSCAELSKRDRPDLATEIVPKLNHLRDFGLASQS* 672
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu1g0459 671 MobiDBLite consensus disorder prediction 177 266 - -
Pvu1g0459 671 SUPERFAMILY Adenine nucleotide alpha hydrolases-like 17 118 - -
Pvu1g0459 671 MobiDBLite consensus disorder prediction 178 241 - -
Pvu1g0459 671 Coils Coil 262 282 - -
Pvu1g0459 671 ProSiteProfiles Protein kinase domain profile. 396 659 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pvu1g0459 671 SMART serkin_6 396 659 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pvu1g0459 671 ProSitePatterns Serine/Threonine protein kinases active-site signature. 514 526 IPR008271 GO:0004672|GO:0006468
Pvu1g0459 671 Gene3D Transferase(Phosphotransferase) domain 1 469 667 - -
Pvu1g0459 671 Coils Coil 313 349 - -
Pvu1g0459 671 Gene3D Phosphorylase Kinase; domain 1 366 468 - -
Pvu1g0459 671 SUPERFAMILY Protein kinase-like (PK-like) 379 651 IPR011009 -
Pvu1g0459 671 PANTHER ADENINE NUCLEOTIDE ALPHA HYDROLASE-LIKE DOMAIN KINASE 9 670 - -
Pvu1g0459 671 Gene3D HUPs 13 145 IPR014729 -
Pvu1g0459 671 PANTHER OS02G0152300 PROTEIN 9 670 - -
Pvu1g0459 671 CDD STK_N 15 160 - -
Pvu1g0459 671 Pfam Universal stress protein family 17 133 IPR006016 -
Pvu1g0459 671 Pfam Protein tyrosine and serine/threonine kinase 401 652 IPR001245 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu1g0459 Pvu-Chr1 4762232 4766786 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu1g0459 85 666 Receptor kinase-like Gene Family AT5G12000 55.772 0.0 639
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-IXb Pvu1g0459 PK_Tyr_Ser-Thr 6.5e-40 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu1g0459 - - var:108336981 1071.23