Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu1g0453 ATGGTGAAACCGGCCATAACCACCGTTGATTCTTTTTCTTCTTCTTCTTCGTCTTCTCCTCCTGCATCTTGCTATGACTCATTCTCCACCAACAATTCTAGTGGGTGTAAGGTGTACAAAGGAGTGAGGAAGAGAAAATGGGGGAAATGGGTGTCTGAAATCAGGCTTCCGAATAGCCGTGAGAGAATATGGTTGGGGTCTTATGAGACGCAGGAGAAGGCAGCAAGGGCCTTTGATGCTGCTCTCTATTGCCTGCGGGGGAAGGCTGCGAGTTTCAACTTCCCCGACACACCTCAGCACATGGAAATGGCGGCGGTGGAGATACCGTGCAGCCACCAAGAGATCCAAGAGGTGGCGGCGAAGTTTGCCAATAAGGAGGGGGTTTTGGCAGAAGAAGAAGAAGCTCGAAGTGAGTCCAAGTCTAACGACACCACAGACACAAACACGACCTTTCCTGGGACAAACAATCATGCGCAAGTGGACCAAGACACCATGGATTGGACATTCATGAACATGTTGGATGACTTGAATGTCTCTGATTTCGGCCTCTTTGGAGCTGAGAAGGCTGAGTTTTTGTGCCCCACAACACAAACTCCACTGCTCTTTCACAATGGAGATGAGATTGAAGTTGATGATCATGATCATGATGCTTTTTCTAACCACTCTTTTCTTTGGAGTTGGAACTTCTGA 690 0.4812 MVKPAITTVDSFSSSSSSSPPASCYDSFSTNNSSGCKVYKGVRKRKWGKWVSEIRLPNSRERIWLGSYETQEKAARAFDAALYCLRGKAASFNFPDTPQHMEMAAVEIPCSHQEIQEVAAKFANKEGVLAEEEEARSESKSNDTTDTNTTFPGTNNHAQVDQDTMDWTFMNMLDDLNVSDFGLFGAEKAEFLCPTTQTPLLFHNGDEIEVDDHDHDAFSNHSFLWSWNF* 230
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu1g0453 229 MobiDBLite consensus disorder prediction 129 158 - -
Pvu1g0453 229 ProSiteProfiles AP2/ERF domain profile. 38 95 IPR001471 GO:0003700|GO:0006355
Pvu1g0453 229 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF018 15 229 - -
Pvu1g0453 229 SUPERFAMILY DNA-binding domain 38 96 IPR016177 GO:0003677
Pvu1g0453 229 MobiDBLite consensus disorder prediction 142 158 - -
Pvu1g0453 229 Gene3D AP2/ERF domain 38 96 IPR036955 GO:0003700|GO:0006355
Pvu1g0453 229 MobiDBLite consensus disorder prediction 7 22 - -
Pvu1g0453 229 MobiDBLite consensus disorder prediction 1 22 - -
Pvu1g0453 229 PRINTS Ethylene responsive element binding protein signature 39 50 IPR001471 GO:0003700|GO:0006355
Pvu1g0453 229 PRINTS Ethylene responsive element binding protein signature 61 77 IPR001471 GO:0003700|GO:0006355
Pvu1g0453 229 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 15 229 - -
Pvu1g0453 229 CDD AP2 39 97 IPR001471 GO:0003700|GO:0006355
Pvu1g0453 229 SMART rav1_2 38 101 IPR001471 GO:0003700|GO:0006355
Pvu1g0453 229 Pfam AP2 domain 38 87 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu1g0453 Pvu-Chr1 4680371 4681060 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu1g0453 39 184 AP2-EREBP Transcription Factor Family AT1G19210 50.000 3.05e-39 132
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Pvu1g0453 AP2 1.6e-11 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu1g0453 - - pvu:PHAVU_001G044500g 433.335