Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu1g0442 ATGATAACTTGGAACCTGTTGCACGCAAGAATAAGCTGTACACACGCAATAGCGCTATTATTTCTTCATTTTTTCTTGTTGGTCAAAGAAATAGTACCTGGGAACCCTGAATATTCAAGCTCTGAAATGGGGTACCTCAATTCAGTTTTGTCCTCTTCAAGCCAGGTTCATGCCGCAGAAGATTCACCTGTCAGTGGAGGGGGCCTCAGTCAGAATGGAAAATTCAGCTATGGGTATGCTAGCTCCCCTGGCAAGAGATCTTCAATGGAAGATTTTTATGAGACAAAAATTGATGGCGTTAACGGTGAAATTGTTGGTCTTTTTGGAGTTTTTGATGGCCATGGAGGTGCTCGTGCTGCTGAGTATGTCAAGCAAAACCTGTTTAGCAATTTGATCACACATCCAAAATTTATTTCTGACACCAAATCTGCAATAGCTGATGCATATAATCATACCGACTCTGAATTTCTGAAATCTGAAAATAATCAAAACAGAGATGCTGGATCAACTGCTTCCACTGCCATTCTTGTTGGAGACCGTTTGCTTGTTGCAAATGTTGGGGATTCCAGAGCTGTTATATGCAGGAGTGGAAATGCCATTGCTGTTTCCCGAGATCACAAGCCAGACCAAACTGATGAGAGGAGAAGGATTGAAGATGCAGGTGGCTTTGTTATGTGGGCTGGAACTTGGAGAGTTGGTGGCGTTCTTGCCGTTTCTCGTGCATTTGGTGATAGACTCCTGAAGCAGTATGTTGTTGCTGATCCAGAAATCCAGGAAGAAAAGGTTGATAGCTCTCTTGAGTTTCTTATATTGGCCAGTGATGGGCTATGGGATGTCGTCTCAAATGAGGAAGCTGTTGCCATGATTAAATCGATTCAGGACGCGGAGGAGGCGGCAAAGAGACTGATGCAAGAAGCATATCAGCGAGGTAGTTCTGACAACATTACATGTGTTGTTGTTCGTTTCTTGTCGAACCAAGGTGCTCCTTCTCATAGCAACTCTGGCTAA 1008 0.4365 MITWNLLHARISCTHAIALLFLHFFLLVKEIVPGNPEYSSSEMGYLNSVLSSSSQVHAAEDSPVSGGGLSQNGKFSYGYASSPGKRSSMEDFYETKIDGVNGEIVGLFGVFDGHGGARAAEYVKQNLFSNLITHPKFISDTKSAIADAYNHTDSEFLKSENNQNRDAGSTASTAILVGDRLLVANVGDSRAVICRSGNAIAVSRDHKPDQTDERRRIEDAGGFVMWAGTWRVGGVLAVSRAFGDRLLKQYVVADPEIQEEKVDSSLEFLILASDGLWDVVSNEEAVAMIKSIQDAEEAAKRLMQEAYQRGSSDNITCVVVRFLSNQGAPSHSNSG* 336
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu1g0442 335 Pfam Protein phosphatase 2C 105 315 IPR001932 -
Pvu1g0442 335 Gene3D - 68 327 IPR036457 -
Pvu1g0442 335 PANTHER ALPHABET, ISOFORM E-RELATED 45 329 - -
Pvu1g0442 335 Coils Coil 285 305 - -
Pvu1g0442 335 CDD PP2Cc 75 322 IPR001932 -
Pvu1g0442 335 ProSiteProfiles PPM-type phosphatase domain profile. 76 322 IPR001932 -
Pvu1g0442 335 ProSitePatterns PPM-type phosphatase domain signature. 107 115 IPR000222 GO:0043169
Pvu1g0442 335 SMART PP2C_4 66 320 IPR001932 -
Pvu1g0442 335 SUPERFAMILY PP2C-like 70 322 IPR036457 -
Pvu1g0442 335 PANTHER PHYTOCHROME-ASSOCIATED PROTEIN PHOSPHATASE TYPE 2C 45 329 - -
Pvu1g0442 335 SMART PP2C_SIG_2 92 322 IPR001932 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu1g0442 Pvu-Chr1 4495045 4500430 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu1g0442 43 326 PP2C-type Phosphatase Gene Family AT4G31750 91.901 0.0 535
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu1g0442 K17506 - gmx:100795017 627.476
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu1g0442 1 4495045 4500430 Pvu1g0442 1 4495045 4500430 ECH
Pvu9g0818 9 12874523 12879443 Pvu1g0442 1 4495045 4500430 ECH