Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu1g0427 ATGGCATTGTTCCGCAAGTTCTTCTATAAGAAGCCCCCAGATGGGCTTCTAGAAATCACTGAAAGGGTTTATGTCTTTGATTACTGCTTTACCACGGATGTTATGGAAGAAGAAGAATATAGAGTGTATATAGGAGGAATAATTGGGCAACTTCGTGGTCACTTCCCTGATGCTTCATTTATGGTGTTCAACATGCGGGAGGGAGACAGCCAAAGCCAGATTTCAAACATTTTGTGCGACTATGATATGACTGTGATAGACTATCCTCGACAGTATGAAGGTTGTCCGTTGCTTACCATGGAGATGATCCATCATTTCTTGAGATCAGGTGAAAACTGGCTTCAACTTGGGCAACAAAATGTTGTCTTGATGCATTGTGAACGAGGTGGGTGGCCGTTATTAGCATTTATGCTGGCTGCACTCTTGATTTATAGAAAGATGTTTACAGGGGAGCAGAAAACACTAGACATGATATACAAGCAAGCTCCTCGGGAACTTCTGCAGTTGATGTCACCATTGAATCCTTTACCTTCACAATTGAGATATCTTCAGTATATATCAAGAAGAAATGTTGGTTCAGAATGGCCTCCTCTTGATAGGGCACTTACTTTGGACTGTGTAATTATAAGACTCATTCCTAACATGGGTGGAGAGGGTGGCTGCCGTCCTATATTTAGAATATATGGACAAGACCCTTTTATTCCTGCAGATCGAACTCCCAAAGTTCTCTTTTCAACTCCAAAAAGGAGCAAACTTGTTCGCTATTGTAAGCAGACTGATTGTGAACTGGTTAAGATTGACATCCACTGTCATGTTCAAGGTGATGTCGTTTTTGAGTGTATTCATCTGCACAGTGATTTAGAGCACGAAGAAATGATGTTTCGGGTGATGTTTAATACAGCATTCATAAGATCAAATATTTTGATGCTTAACCGTGATGAAATTGACATACTATGGAATGCTAAAGATTACTTCCCTAAAAATTTTAGAGTGGAGGTTCTTTTCTCAGATATGGATGCTTCATCTTCTGTTATTTCACTTGATCTGCCTCGTATTGAGGAGAAAGAAGGCCTCCCGGTTGAAGCATTTGAAAAGGTCAAGGAGATTTTCAGCAACGTGGATTGGCTAGATTCGAAGGAAGAAGTAGCAAGTGTGCTCCAACAGATCACAGCTTCAAATATCCTTCTTGAAAGATTGGACACTGGGGTTTCTGCTGCAACAAGTGGCTTTCTAATGGGGTCATCTGAAAAGTTTACAGCTATTTCAAAGCGACACAGTGATACAAGCAATCTGACTTCTGCAGTTCAGGGGATACATTCTACGTCCTCATTGGGATCGTCTGTGGATGTTGCTATGGAAAATAAGACTGAACCATTGGAATCAAAGACATTGTCCGAAAATGACATTGAGACTCTTGAATGTTCAGGTCACAGGAACCAACCTATTCACTCATTTGGGCTCACAAAAGATTCTAGTTCTACCGAAAGGCCAGTTGAATTGTTTGAATCAAATACATCTGTGGAAAACGATGCCAAGGTTCCAACATCTATGGCTCATGTGGAGCAGTCAATGTCCTCAACTGGACCATCTAAGGATGCCAATTCAATGACACAGGATGTGGGACCATTAGAATCAAAGTCATTAACGGATGGAAATTTATTGAAAGAGAAGATGGGGCAAGAGCAAATGGTATTGTCAGAAAGTGATACCAAGAGTGTCACATCCACAGTTCAGGGGAAACCATATAGTCCCTTACTTGAACTGCCTGTTGAAGCAAACACAATTAAAGCGAAAATTGAACCTCAAGAATTGCAGGTTTCCCTCCAGCTTCCCACTCAAACTAAAATAATTTCATCCCGGGATCATGCAGCAGTGGATATCAAAGAAGTAACTCATGCAGTGACAGTATCTCCTCCAGCTTCTGCGTTGCCTCCTTCAGACTCCAAGGTGTTAAATTCTATAGACCCTGGTTCCACAACTGTTCCTCCAGCATCATTATCGCCTTTGCTTCCATCTTTACCTTTAAAAACTTCAGTTGATGCTCTTAACACCACGAAAAAGACTTCTGGATCCCTTCCTCCTGCAGCTGTCACTACTACCCCGCCACCACCACCACCACCACCACTTCCTCAATGCGATCACACTTCAAATTTGATGCCATCTAATGTTCCACAGTACCCTGAGAATACAAATGAAGGTAAGAAACCATTGGTCAGTCCTCCTCTTCCCCCTTCCCTTCCTGAAACATCACATTCCACAACCAAAGTTTCAGGTAAAGGTCCTCCTGCACCGCCGCCTCCACCTGCACTCTTTGGGTTTCCTTCTTCATTGAGTATGAATGAATCGATTGCTACGCCTGGCCTTCCTGCTCCTCCCCCGCCTCCACCATTAGCACCACCACCACCCCCTCCTCCAGCTTCTGCATTCCAAAATTCTTTGTCTAAGAACTCAATAAATGGTCCTCCTGTACCCCCACCTCCACCTCCTAGCCTTCCTGGTTCAATTCCATCACCATCACCAAGAGCGCCACCACCACCCCCTCCTCCAGGTTCTGCATCCCAAAATTCTCTGTCTAGCTCCACAAATGTTCCACCTGTACCCCCACCTCCCCTTTCTGCCAATGGATTGTCAAAACCGGCAGTTCCTGGACCACCTTCTGCTCCTTTTGGTGCAAAGGAACGTGGCCTGACGCGAGCTAACCCAAAAGGTCAATCTAAGAGGAGCAATCTGAAACCTTACCATTGGTTAAAATTAACGAGGGCAATGCAAGGAAGCTTATGGGCTGAAACACAGAAACTAGATGAATTTTGTAGGGCTCCAGAGTTTGACATGTCAGAACTTGAAACTTTGTTCTCCGCAGCTGCTCCAGCTACTACTGATGGAAAAGGAGGAAAATTAAATCGCCGTGCCTCTGGCCTCAGAGTTGAGAAAGTTCAACTGATTGAGCTCAGGCGTGCATATAACTGTGAGATCATGCTTACAAAAGTCAAAATCCCTTTGCCTGATTTGATGTGTGCTGTGCTTGCAATGGATGATTCAGTATTAGATGTTGATCAAATTGAGAACCTCATAAAATTCTCTCCAACCAAAGAAGAGATGGAAACACTCAAGAACTATACTGGGAATAAGGACAACTTGGGAAAGTGTGAACAGTTCTTCATAGAATTAATGAAAGTGCCAAGAGTGGAAAGCAAGCTAAGAGTTTTCTCTTTTAAGATGCAATTCTTATCCCAGGTTTCAGAGCTTAAAAGAGACTTAAATATTGTGAATTCTGCATCTGAAGAGATAAGGAATTCAGTCAAGTTGAAAAGAATCATGCAGACCATTCTTTCTCTGGGTAATGCTTTGAACCATGGAACTGCAAGAGGTTCGGCTGTTGGGTTTCGATTGGATAGTCTCCTTAAACTGACCGATACACGAGCTAGAAACAGCAAGATGACTCTTATGCACTATCTCTGTAAGGTGCTTTCCAAAAAACTAGGAGAACTTCTCGATTTCCACAAAGACCTATTGAGTTTGGAGGCTGCAAGCAAGATACAATTAAAATACTTGGCAGAGGAAATGCAAGCTATTAGTAAAGGACTGGAGAAAGTAGTTCAGGAATTGACTGCATCCGAGAATGATGGACTTGTGTCAGAAAATTTCTGCCAGATTCTGAAGGAATTTCTTTCTTATGCTGAAGCTGAAGTAAGGTCTTTGGCTCAACTTTATGCCAATGTGGGTAGAAATGCAGATGCATTGGCTTTATACTTTGGTGAAGATCCAGCACGTTGCCCATTTGAACAAGTTGTATCTACGCTGCTCAACTTTGTGAGATTGTTCATAAAAGCACATGAAGAAAATTGCAAGCAGATTGAACTAGAAAGAAAGAGAGCTGAGAAGGAAGCAGAGAATGAGAAGTTGAAGATAGCTGCTGCCAAGAAGGAGTCTGAACCGATGATAAGGACCACCATAAAGAGTGAGGACATTAAATGA 3975 0.4264 MALFRKFFYKKPPDGLLEITERVYVFDYCFTTDVMEEEEYRVYIGGIIGQLRGHFPDASFMVFNMREGDSQSQISNILCDYDMTVIDYPRQYEGCPLLTMEMIHHFLRSGENWLQLGQQNVVLMHCERGGWPLLAFMLAALLIYRKMFTGEQKTLDMIYKQAPRELLQLMSPLNPLPSQLRYLQYISRRNVGSEWPPLDRALTLDCVIIRLIPNMGGEGGCRPIFRIYGQDPFIPADRTPKVLFSTPKRSKLVRYCKQTDCELVKIDIHCHVQGDVVFECIHLHSDLEHEEMMFRVMFNTAFIRSNILMLNRDEIDILWNAKDYFPKNFRVEVLFSDMDASSSVISLDLPRIEEKEGLPVEAFEKVKEIFSNVDWLDSKEEVASVLQQITASNILLERLDTGVSAATSGFLMGSSEKFTAISKRHSDTSNLTSAVQGIHSTSSLGSSVDVAMENKTEPLESKTLSENDIETLECSGHRNQPIHSFGLTKDSSSTERPVELFESNTSVENDAKVPTSMAHVEQSMSSTGPSKDANSMTQDVGPLESKSLTDGNLLKEKMGQEQMVLSESDTKSVTSTVQGKPYSPLLELPVEANTIKAKIEPQELQVSLQLPTQTKIISSRDHAAVDIKEVTHAVTVSPPASALPPSDSKVLNSIDPGSTTVPPASLSPLLPSLPLKTSVDALNTTKKTSGSLPPAAVTTTPPPPPPPPLPQCDHTSNLMPSNVPQYPENTNEGKKPLVSPPLPPSLPETSHSTTKVSGKGPPAPPPPPALFGFPSSLSMNESIATPGLPAPPPPPPLAPPPPPPPASAFQNSLSKNSINGPPVPPPPPPSLPGSIPSPSPRAPPPPPPPGSASQNSLSSSTNVPPVPPPPLSANGLSKPAVPGPPSAPFGAKERGLTRANPKGQSKRSNLKPYHWLKLTRAMQGSLWAETQKLDEFCRAPEFDMSELETLFSAAAPATTDGKGGKLNRRASGLRVEKVQLIELRRAYNCEIMLTKVKIPLPDLMCAVLAMDDSVLDVDQIENLIKFSPTKEEMETLKNYTGNKDNLGKCEQFFIELMKVPRVESKLRVFSFKMQFLSQVSELKRDLNIVNSASEEIRNSVKLKRIMQTILSLGNALNHGTARGSAVGFRLDSLLKLTDTRARNSKMTLMHYLCKVLSKKLGELLDFHKDLLSLEAASKIQLKYLAEEMQAISKGLEKVVQELTASENDGLVSENFCQILKEFLSYAEAEVRSLAQLYANVGRNADALALYFGEDPARCPFEQVVSTLLNFVRLFIKAHEENCKQIELERKRAEKEAENEKLKIAAAKKESEPMIRTTIKSEDIK* 1325
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu1g0427 1324 Gene3D - 196 341 - -
Pvu1g0427 1324 MobiDBLite consensus disorder prediction 646 666 - -
Pvu1g0427 1324 MobiDBLite consensus disorder prediction 786 808 - -
Pvu1g0427 1324 MobiDBLite consensus disorder prediction 480 547 - -
Pvu1g0427 1324 Pfam C2 domain of PTEN tumour-suppressor protein 200 336 IPR014020 -
Pvu1g0427 1324 Gene3D Protein tyrosine phosphatase superfamily 12 191 IPR029021 -
Pvu1g0427 1324 ProSiteProfiles C2 tensin-type domain profile. 199 338 IPR014020 -
Pvu1g0427 1324 Pfam Formin Homology 2 Domain 906 1274 IPR015425 -
Pvu1g0427 1324 MobiDBLite consensus disorder prediction 862 886 - -
Pvu1g0427 1324 MobiDBLite consensus disorder prediction 637 672 - -
Pvu1g0427 1324 Gene3D Formin, FH2 domain 919 1312 IPR042201 -
Pvu1g0427 1324 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 201 338 IPR035892 -
Pvu1g0427 1324 ProSiteProfiles Formin homology-2 (FH2) domain profile. 900 1300 IPR015425 -
Pvu1g0427 1324 SMART it6_source 699 1322 IPR015425 -
Pvu1g0427 1324 SMART PTEN_C2_2 197 337 IPR014020 -
Pvu1g0427 1324 Coils Coil 1275 1311 - -
Pvu1g0427 1324 MobiDBLite consensus disorder prediction 819 852 - -
Pvu1g0427 1324 MobiDBLite consensus disorder prediction 714 729 - -
Pvu1g0427 1324 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 12 187 IPR029021 -
Pvu1g0427 1324 SUPERFAMILY Formin homology 2 domain (FH2 domain) 976 1300 - -
Pvu1g0427 1324 MobiDBLite consensus disorder prediction 684 911 - -
Pvu1g0427 1324 MobiDBLite consensus disorder prediction 480 545 - -
Pvu1g0427 1324 MobiDBLite consensus disorder prediction 696 713 - -
Pvu1g0427 1324 PANTHER FORMIN-J 821 1317 - -
Pvu1g0427 1324 PANTHER FORMIN-J 1 805 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu1g0427 Pvu-Chr1 4288331 4311580 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu1g0427 1 402 FH2 protein (formin) Gene Family AT2G25050 71.216 0.0 643
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu1g0427 - - pvu:PHAVU_001G042000g 2352.4
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu1g0427 1 4288331 4311580 Pvu1g0427 1 4288331 4311580 ECH