Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu1g0408 ATGTTGGCAACCTTTGAAAATTTCCACTACTTGAAAACTTTTCTTCTTTTGTTCATCCTCTTTCTCCTTCCAATAAACTTTGTTCAACCATTTTCCTTCAGCATAACTAACTTTAACGACACTGAAAGTGCAAGCATCGTTGGATACGCAGGCGTGGCCAAGATTGAGGACGGGTCTGTAGTGCTCAACCCACTCATCGGCAACGGAGTTGGAAGAGCCATCTATGGCCAACCTCTACGCCTCAAAAACTCTTCTAACGGACATGTCTCTGATTTTTCAACTCGCTTCTCATTCACTATCGACGTACCATCAGGAGTCAAGTACGGTGATGGCTTTGCCTTCTACTTGGCCCCTATTGCTTACCAGATTCCGACCACTACTGATGATGGCTCCCTTCTCGGCCTATACGATGACACCCAAAATAACATCCTTGCTGTCGAATTTGACACTTATGTAAACGACTTAGACCCACCAATGCAACACGTAGGGATCAACAATAACTCTGTGGCATCTCTCAACTATACCAAGTTTGATATTGAGACCAACACAGGGAAGATGGGGCATGCCTTGATAACTTATAATGCTTCTGCCAAACTCCTCGCTGTTTCGTGGTTATTTGATGGAACTAGTTCTGCTTCTTCTCCCAGCAATTATCTTTCGTACAACATTGACCTGTGGGCAATTTTACCGGAGTGGGTCAATGTTGGGTTTTCGGGCTCAACTGGGTCGTCCACTGAGAAAAATGTGATCCATTCCTGGGAGTTCAGTTCAAGCCTAGATATAAATTCTACGCATGCAGAGGAAAACAGAGAAAATGGCATCGCAACCAAATGCAAGGTTCAGGTCAAAGTAGTAGTTCTTACAGTGGTTTGTTCTATTGTTTTTGTGATCGTGGTTATTTGTATTTCTTGGGTGACCATCAAAAGGAGAAGAACGGAAGATGGTGTTGGTTTCGACAGAGAAGTTATGCCTAGAAGGTTTGGTTATGGCGAAATAGTTTCAGCCACCAACGGGTTTGCAGATGATAGAAGGCTGGGAGAAGGAGGGTCTGGAGAAGTTTACAAAGGGTTTCTGAATGATGGAGGGCGCGTGGTTGCGGTGAAAAGGATATTTTCTGATGTGGAAGATTCTGAGAGAATATTTAGAAACGAGGTGAAGATTATAAGTCGTCTTATACATAGAAACCTTGTGCAGTTCATGGGGTGGTGCCAGGAGGATGGGGAGCTGTTACTGGTTTTTGAGTACATGAGTAATGGAAGCCTTGACAATCATCTTTTTGGGAACAGAAGAAGGTTGACATGGAATGTGAGATACAAGATAGCATTAGGTGTGGCTAGAGCACTTCGTTATCTTCATGAAGACGCAGAGCAGTGTGTTGTTCATAGGGATATAAAGTCAGGTAATGTTTTGTTAGACACAGATTTCAATACAAAGATTAGTGACTTTGGGATAGCAAAGTTGGTGGATCCAAGATTGAGGACTCAGAAGACAAAGGTGGTGGGAACATATGGGTACCTAGCTCCAGAATATATAAACGAAGGGAGGGTTAGCAAAGAATCAGACATGTACGGTTTTGGGGTTTTGGCTTTGGAGATAGCATGTGGAAGGAGGACTCACCAGGATGGGGAAAGTAATCACTTGCCTTTGAGGAAATGGGTATGGAAAAATTATGTGGATGGGGAGATTTTGAATGCTGCTGATGAGGAATTGAAGATGGATTTTGATGTAAATGAAATGAGATGTTTACTGAGTGTGGGAATATGGTGTACCCATCAAGACCACAAGGAAAGGCCAACCTCAGAACAGGTTATAAATGTTCTAAAACAAGAAGTGCCATTGCCAATGTTTTCTGCAAAACTCACTGATAATGGACAACCAGATTCCCTTGGATCGTCATCCAGAAAAGCATAA 1911 0.4286 MLATFENFHYLKTFLLLFILFLLPINFVQPFSFSITNFNDTESASIVGYAGVAKIEDGSVVLNPLIGNGVGRAIYGQPLRLKNSSNGHVSDFSTRFSFTIDVPSGVKYGDGFAFYLAPIAYQIPTTTDDGSLLGLYDDTQNNILAVEFDTYVNDLDPPMQHVGINNNSVASLNYTKFDIETNTGKMGHALITYNASAKLLAVSWLFDGTSSASSPSNYLSYNIDLWAILPEWVNVGFSGSTGSSTEKNVIHSWEFSSSLDINSTHAEENRENGIATKCKVQVKVVVLTVVCSIVFVIVVICISWVTIKRRRTEDGVGFDREVMPRRFGYGEIVSATNGFADDRRLGEGGSGEVYKGFLNDGGRVVAVKRIFSDVEDSERIFRNEVKIISRLIHRNLVQFMGWCQEDGELLLVFEYMSNGSLDNHLFGNRRRLTWNVRYKIALGVARALRYLHEDAEQCVVHRDIKSGNVLLDTDFNTKISDFGIAKLVDPRLRTQKTKVVGTYGYLAPEYINEGRVSKESDMYGFGVLALEIACGRRTHQDGESNHLPLRKWVWKNYVDGEILNAADEELKMDFDVNEMRCLLSVGIWCTHQDHKERPTSEQVINVLKQEVPLPMFSAKLTDNGQPDSLGSSSRKA* 637
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu1g0408 636 ProSitePatterns Protein kinases ATP-binding region signature. 345 368 IPR017441 GO:0005524
Pvu1g0408 636 ProSitePatterns Serine/Threonine protein kinases active-site signature. 459 471 IPR008271 GO:0004672|GO:0006468
Pvu1g0408 636 Gene3D Phosphorylase Kinase; domain 1 324 415 - -
Pvu1g0408 636 ProSitePatterns Legume lectins beta-chain signature. 144 150 IPR019825 -
Pvu1g0408 636 Gene3D - 29 283 - -
Pvu1g0408 636 Gene3D Transferase(Phosphotransferase) domain 1 416 622 - -
Pvu1g0408 636 Pfam Legume lectin domain 32 267 IPR001220 GO:0030246
Pvu1g0408 636 SUPERFAMILY Concanavalin A-like lectins/glucanases 29 263 IPR013320 -
Pvu1g0408 636 ProSitePatterns Legume lectins alpha-chain signature. 229 238 IPR000985 -
Pvu1g0408 636 CDD lectin_legume_LecRK_Arcelin_ConA 31 259 IPR001220 GO:0030246
Pvu1g0408 636 PANTHER LECTIN RECEPTOR KINASE 37 620 - -
Pvu1g0408 636 Pfam Protein kinase domain 340 605 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pvu1g0408 636 SUPERFAMILY Protein kinase-like (PK-like) 323 614 IPR011009 -
Pvu1g0408 636 SMART serkin_6 339 613 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pvu1g0408 636 PANTHER - 37 620 - -
Pvu1g0408 636 ProSiteProfiles Protein kinase domain profile. 339 616 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu1g0408 Pvu-Chr1 4090077 4092136 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu1g0408 16 620 Receptor kinase-like Gene Family AT5G10530 43.109 1.50e-160 474
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_L-LEC Pvu1g0408 Pkinase 5.5e-52 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu1g0408 - - gmx:100801935 879.396