Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu1g0407 CTCCCACTGTTCTTCCCCCTGTCTCAGGCCTTACTGAGAATGAGGTTGCTAGAGAAGGTGACAGCTTTTGTTCTTCTACTGGCTTTTCATCCTCCTTTCCTTAAAACTGTAGAATCACTAAATTTCAACATAACAAACTTCAACGACCCTGAGAGTGAAAAAACCATGGCATACGTTGGTGATGGCCAAGCCACCAACGGCACCATACAACTCAACATTGTGGACTATCTTTTCCGCGTTGGCAGAGCCTTGTACGCAAAACCTCTGCACCTGTGGGACGCATCTTCGAGTGTTCTCACAGACTTCACCACACGCTTCACTTTCACCATTGACAGAGCCACCAACGGCACCTATGCTGACGGTTTCGCCTTCTACATGGCCCCTCATGGCTACCAGATTCCTCCCAACGCAGCTGGTGGCACTTTTGCCCTTTTCAACACCACCTCCAATACCTTTATTCCACATAACCACGTCCTCGCGGTTGAGTTTGACACACTTAATGGAACCATTGACCCACCCATGCAGCACGTTGGCATAGACGATAACTCGCTCAAATCCGTGGCTTTTGCCAAGTTTGACATTGACAAAAACCTGGGAAAGAAATGTAACGTTTTGATAACCTACACTGCTTCCAACAAGACCCTCTTTGTGGCTTGGTCCTTCAACGGAACGGCAAATTCACACTCCAATTCTTCACTTTCGTACAAGATTGACCTCATGGAAATTCTACCCGAGTGGGTGGATGTTGGGTTCTCTGCTTCAACAGGCGAATTAACTGAGCACAACATTATTCACTCGTGGGAGTTTAGTTCAACGTTGAATTCCGATGCTACGGATAATTCCTCCGGTGAGGGGAACGGTGGGAACGGGAAACGAAACGTTTTGGTGATTGCTTTGGCGACTTCTTCAGCGGTCTTGCTGGTCGTGGTTGCGAGTATTGCAGTTTGGGCCATGATTAGGAGGAAAAGAAGGGATACGGTTGATAAGACTAATGATGGTGAAGGTGGAGCGAACTCAGTTAAGTTTGACTTGGATAGAGCAACTATACCAAGAAGGTTTGATTACAAAGAACTAGTTGCAGCCACCAACGGATTTGCAGATGATAGAAAGCTTGGTCGAGGAGCCTCCGGACAGGTTTACAAAGGGCTTCTGAGTGATTTAGGAAGGGTTGTTGCTGTGAAAAGGATTTTCGCCAAATTCGCAAATTCAGAGAGAGTTTTCATCAATGAGGTTAGGGTTATAAGCCGTCTAATACACAGAAACTTGGTCCAGTTCGTAGGGTGGTGCCACGAGCAAGGTGAGTTTTTGTTGCTTTTTGAGTACATGCCTAATGGAAGCCTCGACACTCATCTCTTTGGGGACAAAAAACCTTTGACCTGGGATGTTAGGTACAAGGTAGCATTGGGAGTGGCTGCAGCAGTTCGTTATCTTCATGAAGATGCGGAGCAGTGTGTTCTTCACAGGGATATTAAGTCAGCAAATGTGTTGTTGGACACAGATTTTAGCACAAAGCTTGGAGATTTTGGAATGGCAAAGTTTGTGGATCCAAGATTGAGGACTCAAATGACAGGAGTGGTGGGGACTTTCGGGTACCTTGCCCCAGAATACATCAACGGAGGTAGGGCTAGTAAGGAATCAGACATCTATAGTTTTGGTGTTGTGGCTCTTGAAATTGCATGTGGAAGGAGGACTTATCTTGATGGGGAGTTTCATATGCCTCTCATGAACTGGGTGTGGAAAAAATACGTGGAAGGGAATGTCATGGATGTTGTTGATGAGAAATTGAACAAGGAGTTTGATGTGGATGAAATGAGAAGCCTGATCATTGTGGGGTTGTGGTGTACTAACCCTAACGACAAGGAAAGGCCAAAGGCAGCACAAGTGATAAAGGTTCTTGAGCTAGAAGCTCCATTGCCAGAGCTTCCACTTGATATGCACGACCATCTTCCTCCTTCTCTAGTTTCATATTCACAAGAACCTAATTATCAGTCCGTGCAGACACTACCTTTCACTGACAGCTTTATATCTGTTGGACGTTAG 2040 0.4583 LPLFFPLSQALLRMRLLEKVTAFVLLLAFHPPFLKTVESLNFNITNFNDPESEKTMAYVGDGQATNGTIQLNIVDYLFRVGRALYAKPLHLWDASSSVLTDFTTRFTFTIDRATNGTYADGFAFYMAPHGYQIPPNAAGGTFALFNTTSNTFIPHNHVLAVEFDTLNGTIDPPMQHVGIDDNSLKSVAFAKFDIDKNLGKKCNVLITYTASNKTLFVAWSFNGTANSHSNSSLSYKIDLMEILPEWVDVGFSASTGELTEHNIIHSWEFSSTLNSDATDNSSGEGNGGNGKRNVLVIALATSSAVLLVVVASIAVWAMIRRKRRDTVDKTNDGEGGANSVKFDLDRATIPRRFDYKELVAATNGFADDRKLGRGASGQVYKGLLSDLGRVVAVKRIFAKFANSERVFINEVRVISRLIHRNLVQFVGWCHEQGEFLLLFEYMPNGSLDTHLFGDKKPLTWDVRYKVALGVAAAVRYLHEDAEQCVLHRDIKSANVLLDTDFSTKLGDFGMAKFVDPRLRTQMTGVVGTFGYLAPEYINGGRASKESDIYSFGVVALEIACGRRTYLDGEFHMPLMNWVWKKYVEGNVMDVVDEKLNKEFDVDEMRSLIIVGLWCTNPNDKERPKAAQVIKVLELEAPLPELPLDMHDHLPPSLVSYSQEPNYQSVQTLPFTDSFISVGR* 680
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu1g0407 679 CDD lectin_legume_LecRK_Arcelin_ConA 40 273 IPR001220 GO:0030246
Pvu1g0407 679 PANTHER PUTATIVE-RELATED 33 648 - -
Pvu1g0407 679 CDD STKc_IRAK 371 633 - -
Pvu1g0407 679 Pfam Protein kinase domain 366 629 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pvu1g0407 679 Pfam Legume lectin domain 39 280 IPR001220 GO:0030246
Pvu1g0407 679 Gene3D Transferase(Phosphotransferase) domain 1 442 647 - -
Pvu1g0407 679 ProSitePatterns Protein kinases ATP-binding region signature. 371 394 IPR017441 GO:0005524
Pvu1g0407 679 SUPERFAMILY Protein kinase-like (PK-like) 349 662 IPR011009 -
Pvu1g0407 679 ProSitePatterns Serine/Threonine protein kinases active-site signature. 485 497 IPR008271 GO:0004672|GO:0006468
Pvu1g0407 679 SMART serkin_6 365 638 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pvu1g0407 679 ProSitePatterns Legume lectins beta-chain signature. 159 165 IPR019825 -
Pvu1g0407 679 PANTHER - 33 648 - -
Pvu1g0407 679 Gene3D - 37 284 - -
Pvu1g0407 679 Gene3D Phosphorylase Kinase; domain 1 335 441 - -
Pvu1g0407 679 ProSitePatterns Legume lectins alpha-chain signature. 243 252 IPR000985 -
Pvu1g0407 679 ProSiteProfiles Protein kinase domain profile. 365 649 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pvu1g0407 679 SUPERFAMILY Concanavalin A-like lectins/glucanases 39 273 IPR013320 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu1g0407 Pvu-Chr1 4084390 4086840 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu1g0407 22 645 Receptor kinase-like Gene Family AT5G10530 45.126 2.72e-180 526
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_L-LEC Pvu1g0407 Pkinase 3.5e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu1g0407 - - vra:106763732 1137.09