LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Pvu1g0399	GTGGAAGATTTGGAAAAGGAAGTGAGAAAGCAAAGAGAAGTAGGAGTGATGTACAAGAGAAAAATGGAAAGAACAGAAGAGTACTTGAGACATTGTCTTGAGATAGCAGAAGAAAATGGAATATTGGATCTGACTCTGAACTACAATGGTGATTCTCAACAATCTCCACTCTCTCTTCACTCCATTTCCAGCCCTCAGATTCCCACTTCTCCACCACACCATGCCCACCACCCCAATCTTGCAACCATTATTCATCAAGCTAAAACCAATGGCTGGTACATTCATCCAAATGAGATTAAATTGGAAGAGAAAATTGGGGAAGGAAGCACCGCAGAGATTCACAGAGGAACATGGCGTGGATTTGAGGTCGCAGTGAAATGCATATCGCAAGACTTTTTCCGTCTAAACCAACACGGCGTCGTTTACTTTTCCCAGGAGCTCGAAACGCTGTCGCGGCAGCGCCACAGGTTCGTGCTTCAGCTCATGGGCGCGTGTATCGAACCTCCCCACCACGCGTGGGTGGTCACGGAGTACCTGAGCACCACGCTGAAGGAGTGGCTCCATGGGCCTGGGAACCGGCGCAGGGAGCGGATGGTGCCACTTCCACCCTTGCAAGAGAGACTGGGCCGGGCCTTGGAAATAGCCCAAGCCATGCAGTACTTGCACGAGCAGAAGCCCAAACTCCTTCACCGCGACTTGAAGCCCAGCAACATATTCCTTGATGACGCCATGCACGTTAGAGTCGCGGATTTTGGCCACGCGCGGTTCTTGGGTGACGAAGAAATGGCCCTAACCGGAGAAACAGGAACATACGTTTACATGGCACCAGAGGTGATCCGAAGTGAACCTTACAATGAAAATTGTGATGTATACAGTTTTGGTATCATACTGAACGAGCTACTAACTGGAAATTACCCTTATGTTGAGACACAATATGGTCCCACCAAGATTGCCATGGAAGTTGTGGAGAATAAGCTTCGACCTAAGCTTCCATGTGATGACGATGATGTTGGAAAACTGAGAGAGCTTCTTCACCTTATTTCTCTTTGTTGGGACCAAAATCCAACAACTCGACCATCCTTTGCCACAATCACTCTTTCTCTCAAAACTTATGCCAACAACAATCTCGTTTAG	1134	0.4797	VEDLEKEVRKQREVGVMYKRKMERTEEYLRHCLEIAEENGILDLTLNYNGDSQQSPLSLHSISSPQIPTSPPHHAHHPNLATIIHQAKTNGWYIHPNEIKLEEKIGEGSTAEIHRGTWRGFEVAVKCISQDFFRLNQHGVVYFSQELETLSRQRHRFVLQLMGACIEPPHHAWVVTEYLSTTLKEWLHGPGNRRRERMVPLPPLQERLGRALEIAQAMQYLHEQKPKLLHRDLKPSNIFLDDAMHVRVADFGHARFLGDEEMALTGETGTYVYMAPEVIRSEPYNENCDVYSFGIILNELLTGNYPYVETQYGPTKIAMEVVENKLRPKLPCDDDDVGKLRELLHLISLCWDQNPTTRPSFATITLSLKTYANNNLV*	378

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Annotation information

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Seq ID	Length	Analysis	Description	Start	End	IPR	GO
Pvu1g0399	377	ProSiteProfiles	Protein kinase domain profile.	99	372	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
Pvu1g0399	377	ProSitePatterns	Protein kinases ATP-binding region signature.	105	126	IPR017441	GO:0005524
Pvu1g0399	377	SMART	serkin_6	99	372	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
Pvu1g0399	377	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	228	240	IPR008271	GO:0004672\|GO:0006468
Pvu1g0399	377	Gene3D	Transferase(Phosphotransferase) domain 1	200	376	-	-
Pvu1g0399	377	MobiDBLite	consensus disorder prediction	55	77	-	-
Pvu1g0399	377	PANTHER	OS09G0443600 PROTEIN	8	374	-	-
Pvu1g0399	377	MobiDBLite	consensus disorder prediction	55	70	-	-
Pvu1g0399	377	Gene3D	Phosphorylase Kinase; domain 1	77	180	-	-
Pvu1g0399	377	SUPERFAMILY	Protein kinase-like (PK-like)	70	364	IPR011009	-

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Pvu1g0399	Pvu-Chr1	3976303	3980948	Dispersed/Wgd

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Pvu1g0399	89	364	MAP Kinase Kinase Kinase	AT2G17700	38.989	1.60e-52	181

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Transcription factors information

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Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	TKL-Pl-8	Pvu1g0399		Pkinase	6.6e-45	CL0016

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Pvu1g0399	-		-	pvu:PHAVU_001G0393001	775.778

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Event-related genes

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Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Pvu1g0399	1	3976303	3980948	Pvu1g0399	1	3976303	3980948	ECH

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