Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu1g0396 ATGGGGTGGGGTCACCTCGGAAGGCATGGCTCAGATTCAGGCGTCGACACGGAGGCTGGTCCGAGCACCGCCGCCACTGAGCCACGGCGATTTCCACTGGCGGCTCAGCCAGAAATGATGCGCGCCGCCGAGAAGGATGATCAATACGCCTCTTTCGTCTACGAAGCCTGTCGTGACGCCTTTCGCCACCTCTTTGGTACCAGAGTTGCGGTGGCTTACCAAAACGAGACGAAGCTCTTAGGGCAGATGCTTTACTACGTTCTGACAACTGGCTCTGGTCAACAAACCCTTGGAGAGGAATACTGCGACATCACTCAGGTTGCAGGAACTTATGGACTTCCTCCTACGCCTGCGAGGCGTGCCCTTTTCATTGTATATCAGTCGGCTATTCCATATATGGCAGAACGGATTAGCTCTAGAATTGCTTCACGAGGCATTGTCCTTGCTGACTCAGAGTCTGCCGAGGGTTTTGGAGAAAATGCCCACAGGAGCCCTGGTTCTCAGATTTCTGACTCTGGTCCTTTATCCTCGTCGGGACAATCTGTTACAACTCTGTCAAGGTTGAAGGGGAAACTGAGTGCATTTTGGTTGCATTTGGTTCAGAGATGGCCCACGATGCTCCCTTTTGTTCGTGAGTTGTTGCAGTTGGCTCTTCGTGCTAACCTTATGTTATTCTACTTTGAAGGCCTTTATTATCATATATCCAAACGTGCTGCTGGCATCCGTTATGTATTTATCGGAAAAGCATCAAACCAAAGACCTAGATACCAAATACTAGGAGTATTTCTGTTGATTCAACTTTGTATAATAGCTGCTGAAAGTCTCCGCCGAAGAAATTTTACTTCAATTGCTGCTTCAGTTAATCAAGCATCCTTTGCATCCCACGATAGATCAGCAGGACATGGTTTACCTGTTTTAAATGAAGAGGGTACTCTGGCAACTCCTGATACTGACAGAGGAAATTGGGTCTCTGATTCTTCATCTTCTGAGCATCATGCAGCTAGTGGGGTTAGCAAGTGCACACTTTGCCTTAGTAATCGTCAATACCCAACAGCTACTTCCTGTGGCCATGTATTCTGCTGGAACTGTATCACAGAATGGTGCAACGAAAAGCCAGAGTGCCCTCTTTGCCGCACCCCCATAACACACTCGAGTCTAGTTTGTGTATATCATTCAGACTTCTAG 1185 0.481 MGWGHLGRHGSDSGVDTEAGPSTAATEPRRFPLAAQPEMMRAAEKDDQYASFVYEACRDAFRHLFGTRVAVAYQNETKLLGQMLYYVLTTGSGQQTLGEEYCDITQVAGTYGLPPTPARRALFIVYQSAIPYMAERISSRIASRGIVLADSESAEGFGENAHRSPGSQISDSGPLSSSGQSVTTLSRLKGKLSAFWLHLVQRWPTMLPFVRELLQLALRANLMLFYFEGLYYHISKRAAGIRYVFIGKASNQRPRYQILGVFLLIQLCIIAAESLRRRNFTSIAASVNQASFASHDRSAGHGLPVLNEEGTLATPDTDRGNWVSDSSSSEHHAASGVSKCTLCLSNRQYPTATSCGHVFCWNCITEWCNEKPECPLCRTPITHSSLVCVYHSDF* 395
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu1g0396 394 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 315 391 IPR013083 -
Pvu1g0396 394 Pfam Pex2 / Pex12 amino terminal region 46 277 IPR006845 -
Pvu1g0396 394 MobiDBLite consensus disorder prediction 1 33 - -
Pvu1g0396 394 SUPERFAMILY RING/U-box 339 383 - -
Pvu1g0396 394 ProSiteProfiles Zinc finger RING-type profile. 340 378 IPR001841 -
Pvu1g0396 394 SMART ring_2 340 377 IPR001841 -
Pvu1g0396 394 Pfam Zinc finger, C3HC4 type (RING finger) 339 383 - -
Pvu1g0396 394 ProSitePatterns Zinc finger RING-type signature. 355 364 IPR017907 -
Pvu1g0396 394 PANTHER PEROXISOME ASSEMBLY PROTEIN 10 27 391 - -
Pvu1g0396 394 CDD RING-HC_PEX10 339 378 - -
Pvu1g0396 394 PANTHER PEROXISOME BIOGENESIS FACTOR 10 27 391 - -
Pvu1g0396 394 MobiDBLite consensus disorder prediction 157 178 - -
Pvu1g0396 394 MobiDBLite consensus disorder prediction 163 178 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu1g0396 324 390 C3H Transcription Factor Family AT4G28270 28.916 1.43e-09 55.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu1g0396 K13346 - gmx:100783914 721.85
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu1g0396 1 3928337 3932861 Pvu1g0396 1 3928337 3932861 ECH