Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu1g0390 ATGGCATTTCGATTTGGGCTCCTTATTTTGCCTTTGCTAATTTGTTTGAATGTTAACTCTGTGGAATCTGATGATGGAGCAACGCTGTTGGAGATGAAGAAGTTATTCAGGGATGTGGATAATGTTCTATATGATTGGACAGACTCGCCATCATCAGATTATTGTGCCTGGAGAGGGATAACATGTGATAATGTCACATTTAATGTTGTTGCACTCAATCTTTCAGGGTTGAATCTTGATGGGGAAATTTCACCTGCAATAGGGAAGCTTCAGAGTTTGGTCTCTATTGACCTGAGAGAAAACAGGTTATCAGGGCAGATACCAGATGAGATTGGTGACTGTTCTTCATTGAAGAACTTGGACTTGTCATTTAATGAAATTAGAGGGGATATACCATTTTCTATTTCTAAATTAAAACAACTGGAGAACCTGATTTTGAAGAACAACCAGTTGATTGGACCGATTCCTTCAACTTTGTCTCAGATTCCTAATTTGAAGATTCTAGACCTGGCTCAAAATAATCTAAGTGGTGAAATACCAAGGCTTATATACTGGAACGAAGTTTTGCAGTATCTGGGCTTGAGAGGAAACAATTTGATTGGTTCACTATCACCAGACATGTGCCAGTTAACTGGGCTGTGGTATTTTGATGTGAGAAACAATAGCCTGACAGGAAGTATTCCAGAAAACATTGGCAATTGTACTACCTTCCAGGTTTTGGATTTATCCTACAACCAGCTAACTGGAGAGATACCATTCAATATTGGATTCTTGCAAATAGCTACTTTGTCATTGCAAGGCAATAAACTCTCTGGGCATATTCCATCGGTGATTGGTCTCATGCAAGCACTTGCTGTCTTAGACTTGGGCTGTAACATGCTAAGTGGACCAATCCCTCCTATCTTGGGAAATTTGACCTACACAGAAAAATTATACTTGCATGGAAACAAGCTGACTGGCTTCATCCCCCCGGAGCTTGGAAATATGACAAAACTTCACTATTTAGAATTGAATGACAATCATTTAAGTGGACATATTCCCCCTGAGCTTGGAAAGCTTACTGATCTCTTTGACTTAAATGTTGCCAATAACAATCTCGAAGGAACAATTCCTAGTAATATTAGCTCATGTAAAAATCTCAACAGCCTCAATGTGCATGGAAACAAGTTGAGTGGAACAATTCCCCCTGCTTTGCAAAGCTTGGAGAGCATGACCTCTTTGAATCTTTCTTCCAACAATCTTCAGGGTGCAATTCCAATTGAACTGTCACGGATTGGTAATTTGGATACACTGGATATTTCAAACAATCATTTAGTTGGATCCATTCCTTCTTCCCTTGGCGACTTGGAACATCTTCTGAAGTTGAACCTAAGCAGAAACAATTTGACTGGAGTTATTCCTGCAGAATTTGGAAATCTTAGAAGTGTCATGGAAATTGATCTTTCAAATAATCAACTATCTGGCCTGATTCCTGAAGAACTTAGCCAGCTTCAGAATATGTTATCCCTGAGACTTGAAAACAACAAATTAACTGGTGATGTGGCGTCACTTTCGAATTGCCTTACTCTCTCTGTGCTTAATGTGTCCTATAACAAACTATTTGGTGTTATCCCCACTAGTAACAACTTTACAAGGTTCCCCCCTGACAGTTTCATCGGAAACCCTGGTCTTTGTGGTAATTGGCTGAATTTGCCGTGTCGTGGTTCTCGACCAGCAGAGCGAGTTACATTATCTAAGGCTGCCATTCTTGGAATTACTCTTGGTGCTCTTGTGATTCTTCTAATGGTATTACTGGCAGCTTGCCGACCACACAGTCCTCCTTTTCCAGATGGATCACTTGACAAGCCAGTTAATTACTCACCTCCAAAACTAGTGATTCTTCATATGAATATGGCACTTCATGTGTATGAAGATATCATGAGGATGACAGAAAACCTGAGTGAGAAGTATATAATTGGATATGGTGCGTCAAGTACAGTTTATAAATGTGTTCTCAAGAATTGCAAGCCAGTGGCTATCAAGAGAATCTATTCTCACTTTCCCCAATGCATTAAAGAATTTGAAACTGAACTCGAGACTGTTGGCAGCATTAAGCACCGGAATCTGGTCAGTCTTCTGTGGGATCTTCTTCATGGACCTACTAAGAAGAAAAAGCTTGACTGGGATCTGCGTCTAAAAGTAGCACTTGGAGCAGCACAAGGGCTTGCCTATCTGCACCATGATTGCAGTCCTCGAATAATCCACAGGGATGTGAAATCATCAAACATTTTATTGGACTCAGACTTTGAGCCCCATCTTACTGATTTTGGCATTGCCAAAAGCCTCTGCCCCTCAAAGTCCCATACTTCTACTTACATAATGGGCACAATTGGCTACATAGACCCTGAGTATGCTAGAACTTCCCGTCTCACCGAGAAGTCTGATGTGTACAGTTATGGCATCGTTTTACTCGAGTTGCTAACTGGAAGGAAAGCTGTTGACAATGAATCCAACCTCCACCATCTGATTTTGGCCAAGGCAGCAACCAATGCTGTAATGGAAACAGTTGATCCAGACATTACTGCCACATGCAAGGACCTTGGAGCTGTAAAAAAGGTTTACCAGCTCGCTCTATTATGCACAAAGAGGCAGCCCGCTGACAGGCCGACAATGCATGAAGTGACACGTGTACTTGGGAGCCTTGTGCCATCAAACACCCCTCCAAAACAACCAGCAGCACTACCTCCTGCTTCAAACCCATCTGCCAAAGTGCCATGCTACATGGATGAGTATGCAAACCTCAAGACTCCACACTTGGTGAACTGCCCTTCAATGAGCACCTCGGATGCACAGCTCTTCCTCAAGTTTGGAGAAGTAATCTCTCAGAACAGTGAGTGA 2877 0.4174 MAFRFGLLILPLLICLNVNSVESDDGATLLEMKKLFRDVDNVLYDWTDSPSSDYCAWRGITCDNVTFNVVALNLSGLNLDGEISPAIGKLQSLVSIDLRENRLSGQIPDEIGDCSSLKNLDLSFNEIRGDIPFSISKLKQLENLILKNNQLIGPIPSTLSQIPNLKILDLAQNNLSGEIPRLIYWNEVLQYLGLRGNNLIGSLSPDMCQLTGLWYFDVRNNSLTGSIPENIGNCTTFQVLDLSYNQLTGEIPFNIGFLQIATLSLQGNKLSGHIPSVIGLMQALAVLDLGCNMLSGPIPPILGNLTYTEKLYLHGNKLTGFIPPELGNMTKLHYLELNDNHLSGHIPPELGKLTDLFDLNVANNNLEGTIPSNISSCKNLNSLNVHGNKLSGTIPPALQSLESMTSLNLSSNNLQGAIPIELSRIGNLDTLDISNNHLVGSIPSSLGDLEHLLKLNLSRNNLTGVIPAEFGNLRSVMEIDLSNNQLSGLIPEELSQLQNMLSLRLENNKLTGDVASLSNCLTLSVLNVSYNKLFGVIPTSNNFTRFPPDSFIGNPGLCGNWLNLPCRGSRPAERVTLSKAAILGITLGALVILLMVLLAACRPHSPPFPDGSLDKPVNYSPPKLVILHMNMALHVYEDIMRMTENLSEKYIIGYGASSTVYKCVLKNCKPVAIKRIYSHFPQCIKEFETELETVGSIKHRNLVSLLWDLLHGPTKKKKLDWDLRLKVALGAAQGLAYLHHDCSPRIIHRDVKSSNILLDSDFEPHLTDFGIAKSLCPSKSHTSTYIMGTIGYIDPEYARTSRLTEKSDVYSYGIVLLELLTGRKAVDNESNLHHLILAKAATNAVMETVDPDITATCKDLGAVKKVYQLALLCTKRQPADRPTMHEVTRVLGSLVPSNTPPKQPAALPPASNPSAKVPCYMDEYANLKTPHLVNCPSMSTSDAQLFLKFGEVISQNSE* 959
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu1g0390 958 SMART serkin_6 646 891 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pvu1g0390 958 ProSitePatterns Protein kinases ATP-binding region signature. 652 674 IPR017441 GO:0005524
Pvu1g0390 958 Pfam Leucine rich repeat 427 486 IPR001611 GO:0005515
Pvu1g0390 958 Pfam Leucine rich repeat 359 414 IPR001611 GO:0005515
Pvu1g0390 958 Pfam Protein kinase domain 717 888 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pvu1g0390 958 Gene3D Ribonuclease Inhibitor 22 185 IPR032675 -
Pvu1g0390 958 Gene3D Transferase(Phosphotransferase) domain 1 709 902 - -
Pvu1g0390 958 ProSitePatterns Serine/Threonine protein kinases active-site signature. 746 758 IPR008271 GO:0004672|GO:0006468
Pvu1g0390 958 ProSiteProfiles Leucine-rich repeat profile. 164 186 IPR001611 GO:0005515
Pvu1g0390 958 ProSiteProfiles Protein kinase domain profile. 646 895 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pvu1g0390 958 Gene3D Ribonuclease Inhibitor 186 258 IPR032675 -
Pvu1g0390 958 SMART LRR_typ_2 90 114 IPR003591 -
Pvu1g0390 958 SMART LRR_typ_2 473 496 IPR003591 -
Pvu1g0390 958 SMART LRR_typ_2 329 353 IPR003591 -
Pvu1g0390 958 SMART LRR_typ_2 210 234 IPR003591 -
Pvu1g0390 958 SMART LRR_typ_2 401 425 IPR003591 -
Pvu1g0390 958 SMART LRR_typ_2 497 520 IPR003591 -
Pvu1g0390 958 SMART LRR_typ_2 449 472 IPR003591 -
Pvu1g0390 958 SMART LRR_typ_2 162 186 IPR003591 -
Pvu1g0390 958 SUPERFAMILY Protein kinase-like (PK-like) 623 891 IPR011009 -
Pvu1g0390 958 Pfam Leucine rich repeat N-terminal domain 23 63 IPR013210 -
Pvu1g0390 958 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE ERECTA 6 945 - -
Pvu1g0390 958 Gene3D Phosphorylase Kinase; domain 1 619 708 - -
Pvu1g0390 958 ProSiteProfiles Leucine-rich repeat profile. 116 139 IPR001611 GO:0005515
Pvu1g0390 958 SUPERFAMILY L domain-like 302 559 - -
Pvu1g0390 958 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 6 945 - -
Pvu1g0390 958 Gene3D Ribonuclease Inhibitor 259 574 IPR032675 -
Pvu1g0390 958 SUPERFAMILY L domain-like 24 258 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu1g0390 Pvu-Chr1 3806453 3815383 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu1g0390 92 957 Receptor kinase-like Gene Family AT5G07180 63.442 0.0 1084
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XIIIb Pvu1g0390 Pkinase 6e-28 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu1g0390 K20718 - gmx:100782307 1795.02