Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu1g0376 ATGGAAGGAATTAGAGTGAAGGAGGAAGAAACAGTGACATGTGGTGGTGGTGGTGGTTCATCATCATCATCTTCGTCTTTTAGCTTTTCTCCACAACCTATGGAAGGGTTGAACGAGGTGGGTACCCCACCATTTTTGACAAAGATCTATGACATGGTGGAAGATCCTTCCACAGACTCTGTTGTGTCATGGAGCACTTCTTGCAATAGCTTTGTTGTCTGGGATTCTCACAAGTTTTCTACTAACATTCTCCCTCGTTACTTCAAGCACAACAATTTCTCCAGCTTCATTCGCCAGCTCAACACCTATGGGTTTAGGAAAGTTGATCCTGATAGATGGGAGTTTGCAAATGAAGGATTTTTGGCAGGACAAAGACACTTATTGAAGTCCATAAAGAGAAAAAGAAAAGTGTCACTGAGCATGCAAGAAAGAGGAGGTGGAGCATGTGTTGAAGTGGGGGAGTTTGGACTAGAAGGGGAGTTGGAGAGGTTGAAAAGAGACAGGAACATTTTGATGGCAGAAATTGTGAGGTTGAGGCATCAACAGCTTAACTCAAGAAACCAATTGAGTGCCATGGAGACCAGATTGCAAGCAACAGAGAAGAAACAACAAAAGATGATGATATTCCTTGCCAAAGCACTAAAAAATCCATCTTTCATGCAACAATTAGTCCACAACAAGACCCCCCAAAGTAGAGAAATGTTGGATGCTGAAATCAATAGGAAAAGGAGACTAATTGCTAGCCAGAGTTTGGAGAACTTGCAACAAGATGATCCTGTAACATTGGTGGACTATCCAAGCCTTGATCAAGATTTGGCAACTATGAAGCCTGAGATGGACACTTTTTTCTCACCAGCTTTTGATAGTGAACATGGTAATGAAATCAAAGAGCCTGCATTAGATTCAGATATAGCAGCTAGTCAGAGTTATTTTGGAGACACAATATTGGAGGACTTTTTCATCAAAGACTTGGTTAATGAGGATCCAAAGGATGAAGTTATCATTGGTGATTGTTCCCAAATTGATGTGCCACTGGAGGATTTGGTAGCAAACTCTGATGATTGGATGGAGCAATTTCAGGACCATGTAGATCATATGGACTATTCAGACTCCAAACCATAG 1122 0.4144 MEGIRVKEEETVTCGGGGGSSSSSSSFSFSPQPMEGLNEVGTPPFLTKIYDMVEDPSTDSVVSWSTSCNSFVVWDSHKFSTNILPRYFKHNNFSSFIRQLNTYGFRKVDPDRWEFANEGFLAGQRHLLKSIKRKRKVSLSMQERGGGACVEVGEFGLEGELERLKRDRNILMAEIVRLRHQQLNSRNQLSAMETRLQATEKKQQKMMIFLAKALKNPSFMQQLVHNKTPQSREMLDAEINRKRRLIASQSLENLQQDDPVTLVDYPSLDQDLATMKPEMDTFFSPAFDSEHGNEIKEPALDSDIAASQSYFGDTILEDFFIKDLVNEDPKDEVIIGDCSQIDVPLEDLVANSDDWMEQFQDHVDHMDYSDSKP* 374
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu1g0376 373 SUPERFAMILY "Winged helix" DNA-binding domain 42 134 IPR036390 -
Pvu1g0376 373 Pfam HSF-type DNA-binding 45 134 IPR000232 GO:0003700|GO:0006355|GO:0043565
Pvu1g0376 373 PRINTS Heat shock factor (HSF) domain signature 45 68 IPR000232 GO:0003700|GO:0006355|GO:0043565
Pvu1g0376 373 PRINTS Heat shock factor (HSF) domain signature 83 95 IPR000232 GO:0003700|GO:0006355|GO:0043565
Pvu1g0376 373 PRINTS Heat shock factor (HSF) domain signature 96 108 IPR000232 GO:0003700|GO:0006355|GO:0043565
Pvu1g0376 373 PANTHER HEAT STRESS TRANSCRIPTION FACTOR A-6B 22 335 - -
Pvu1g0376 373 SMART hsfneu3 41 134 IPR000232 GO:0003700|GO:0006355|GO:0043565
Pvu1g0376 373 Gene3D - 38 135 IPR036388 -
Pvu1g0376 373 ProSitePatterns HSF-type DNA-binding domain signature. 84 108 IPR000232 GO:0003700|GO:0006355|GO:0043565
Pvu1g0376 373 Coils Coil 161 181 - -
Pvu1g0376 373 MobiDBLite consensus disorder prediction 1 28 - -
Pvu1g0376 373 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 22 335 IPR027725 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu1g0376 Pvu-Chr1 3563513 3566108 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu1g0376 31 373 HSF AT2G26150 50.867 3.06e-114 334
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Pvu1g0376 HSF_DNA-bind 1.1e-32 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu1g0376 K09419 - gmx:100778558 514.227
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu1g0376 1 3563513 3566108 Pvu9g0804 9 12751693 12753965 PCT