Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu1g0371 ATGTCCAATTTGACGTCTGCATCAAGTGAAATAAGTGCTTCTTCAGGAATCAGAAATGACAACGGTTTTTTCCATGCTCACCAACACTCCTCCACTTCCATAAATCAAGAACCACAACCAAAGAAGAAGAGAAGTCTTCCTGGCCACCCAGACCCTGATGCAGAAGTGATAGCATTGACTCCACAGACCCTATTGGCAACAAACAGGTTTGTTTGTGAGATTTGTCAGAAAGGGTTTCAAAGAGATCAGAATCTGCAGCTTCATAGAAGAGGGCACAATCTGCCATGGAAGCTAAAGAAGAAGAACAGCAAAGAGGTGAGAAAGAAAGTGTATGTTTGTCCAGAGGCAACATGTGTTCACCATGACCCTTCAAGGGCCCTTGGGGACCTCACAGGAATCAAGAAGCACTTTTTCAGGAAGCATGGAGAGAAGAAATGGAAGTGTGAGAAGTGCTCCAAACGCTATGCAGTTCAATCAGATTGGAAGGCTCACTCCAAAATCTGTGGCACCAGGGAATACAAATGTGACTGTGGTACCCTTTTCTCTAGGAGGGACAGCTTTATCACTCACAGAGCTTTCTGTGATGCCTTGGCACAGGAAAGTGGTAGAGCAGTGAACCCTCACTCTCTACTATCATCACACTCCCAATTTGGAAGCCATGCCCTTCATTTTCAAGCACCATCATCACTGGTGATGAAAAGAGAACAAGAGTTCAACCTATTAGGTCAAGAGATTCCATCATGGTTATCTTCTCCAACAGTGTTGGAAGAATCACTGCACACTCAAACACCAAGAACCACCTCAGACTTCTCCTCCACTCCACACCTATTTCCCACACACTCCTTATTCAACCATGATCAAAACCCTAGCCCTACTTCCGCACCAACTTCTTTTCTTCCTTCTTTGAGTTCCTTCCATTATTCCACAGCCTCTCCTCACATGTCAGCCACTGCTTTGTTGCAAAAAGCCTCACAAATAGGAGTAACAGTAAGTGCAGCTTCACAAGGCATGATAGTGAGACCCCACTTGTTGGTGCAGCAGGTTCACGTGCCTCAATGTACAACAACAACAACTACTACTACAACAGGGTATAATAATATGGCTTCATCTTCACCCCTTTCTGGAATGCTTATGGCTATCCCTTCACGTGAACAAATAGGGACTCATGGATTTGCTCCTGGCTTGGCATCTTGA 1194 0.4489 MSNLTSASSEISASSGIRNDNGFFHAHQHSSTSINQEPQPKKKRSLPGHPDPDAEVIALTPQTLLATNRFVCEICQKGFQRDQNLQLHRRGHNLPWKLKKKNSKEVRKKVYVCPEATCVHHDPSRALGDLTGIKKHFFRKHGEKKWKCEKCSKRYAVQSDWKAHSKICGTREYKCDCGTLFSRRDSFITHRAFCDALAQESGRAVNPHSLLSSHSQFGSHALHFQAPSSLVMKREQEFNLLGQEIPSWLSSPTVLEESLHTQTPRTTSDFSSTPHLFPTHSLFNHDQNPSPTSAPTSFLPSLSSFHYSTASPHMSATALLQKASQIGVTVSAASQGMIVRPHLLVQQVHVPQCTTTTTTTTTGYNNMASSSPLSGMLMAIPSREQIGTHGFAPGLAS* 398
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu1g0371 397 MobiDBLite consensus disorder prediction 1 40 - -
Pvu1g0371 397 PANTHER PROTEIN INDETERMINATE-DOMAIN 7 3 360 - -
Pvu1g0371 397 Gene3D Classic Zinc Finger 51 120 - -
Pvu1g0371 397 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 3 360 - -
Pvu1g0371 397 SUPERFAMILY beta-beta-alpha zinc fingers 69 166 IPR036236 -
Pvu1g0371 397 Gene3D Classic Zinc Finger 124 203 - -
Pvu1g0371 397 MobiDBLite consensus disorder prediction 1 54 - -
Pvu1g0371 397 ProSitePatterns Zinc finger C2H2 type domain signature. 72 92 IPR013087 -
Pvu1g0371 397 ProSiteProfiles Zinc finger C2H2 type domain profile. 70 92 IPR013087 -
Pvu1g0371 397 SMART c2h2final6 70 92 IPR013087 -
Pvu1g0371 397 SMART c2h2final6 146 166 IPR013087 -
Pvu1g0371 397 SMART c2h2final6 111 141 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu1g0371 Pvu-Chr1 3509930 3514355 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu1g0371 31 334 IDZ Gene Family AT3G50700 55.556 4.36e-117 347
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Pvu1g0371 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu1g0371 K25870 - gmx:100783557 568.926