Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu1g0362 ATGACTCCTTATTCTCTCCATTCACCATCTCCTTCCATGCAACCTCAAACCCAAATCTTCATTTCTCCTACTAATCAGGACTGCCCTACCTTTTTCAACATATTTGATCCTAGGAAAACCATAGATATTGGAGCCTTCAGACAAAATTATCAACAGGATGAGATGGTACTGCATGATGGATCATCAAGCAATAACAATCTGAATTCACCTGAGCCAGTTATGGTTGATCCAATTAGCAGCACAAGTGAGGGCAATTTAGCCTCATACAAAATGGATGATGAAGACATTAAAAATGGTCACGGGTCTGGGAAATGGATGTCTTCAAAGATGAGGTTAATGAGAAAAATGATGAGAAGGAGTATGAGTCCAACCACTGACAGATTGAATCCACAAGGGCAAGAAAGCAGATACAGCCAAAGAAGCCCTCGAAACAACACCAGTAACACCACTAGGGTTTGTTCCGACTGCAACACAAGCACTACCCCACTTTGGAGGAGTGGCCCTAAGGGTCCTAAGTCGCTATGCAATGCCTGTGGAATTAGACAGAGGAAGGCAAGAAGGGCAATGGCTGAAGCTTCAAATGATTTGGTTACTCCCATAAACTCAGTATGTGCAAAGACCAGAGTGCACAACAAGGAAAAGAAGTCTCGTGCAAATCATTTTGCACAGTTCAAGAACAAATACAAGTCCACTACTAGTACTGTTACTGCTACTGCAGGGTCATCTGAAGGGGTGAGAAAGATTGAATATTTCAAGGACATTGCCATAAGTTTGAGGAGTAAAAACTCTTCTTTGAACCAAGTGTTTCCACGGGATGAAGTAGCTGAGGCAGCAATGCTTCTGATGGAGTTATCTTGTGGTTTTGTCCACTGA 873 0.425 MTPYSLHSPSPSMQPQTQIFISPTNQDCPTFFNIFDPRKTIDIGAFRQNYQQDEMVLHDGSSSNNNLNSPEPVMVDPISSTSEGNLASYKMDDEDIKNGHGSGKWMSSKMRLMRKMMRRSMSPTTDRLNPQGQESRYSQRSPRNNTSNTTRVCSDCNTSTTPLWRSGPKGPKSLCNACGIRQRKARRAMAEASNDLVTPINSVCAKTRVHNKEKKSRANHFAQFKNKYKSTTSTVTATAGSSEGVRKIEYFKDIAISLRSKNSSLNQVFPRDEVAEAAMLLMELSCGFVH* 291
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu1g0362 290 MobiDBLite consensus disorder prediction 119 170 - -
Pvu1g0362 290 MobiDBLite consensus disorder prediction 122 166 - -
Pvu1g0362 290 CDD ZnF_GATA 152 189 IPR000679 GO:0006355|GO:0043565
Pvu1g0362 290 Pfam GATA zinc finger 153 186 IPR000679 GO:0006355|GO:0043565
Pvu1g0362 290 ProSiteProfiles GATA-type zinc finger domain profile. 147 183 IPR000679 GO:0006355|GO:0043565
Pvu1g0362 290 SMART GATA_3 147 198 IPR000679 GO:0006355|GO:0043565
Pvu1g0362 290 Gene3D - 143 227 IPR013088 GO:0006355|GO:0008270
Pvu1g0362 290 PANTHER GATA TRANSCRIPTION FACTOR 22-RELATED 24 290 - -
Pvu1g0362 290 PANTHER GATA TRANSCRIPTION FACTOR 22-RELATED 24 290 - -
Pvu1g0362 290 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 147 187 - -
Pvu1g0362 290 ProSitePatterns GATA-type zinc finger domain. 153 178 IPR000679 GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu1g0362 Pvu-Chr1 3425720 3427942 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu1g0362 99 182 C2C2-Gata Transcription Factor Family AT4G26150 51.685 1.65e-21 91.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Pvu1g0362 GATA 2.6e-16 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu1g0362 - - vra:106764137 473.396
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu1g0362 1 3425720 3427942 Pvu9g0796 9 12650657 12651460 PCT