Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu1g0348 ATGGAGAATAATATGTACAGTGCTTCACTGGACATTTCTGGCAGAAATTCTGCTGTCATAGAAGAAATTGCACAGCATTTAGCACCGAAGCCACTGATTCAATGCTACTCATTTGACCTCAATAACCAAAACCACATTATAAATGGAATTCCAGTACTTGCTGCAGAACAAGGTGAATCTACAAGTGATGTCCATGTAGATGGTTGCTTCATAAACCCTGCTAGAATTGCTGATTCCAATTCATTTGTCACAATACAAGGAGAGAGTATTGTAGGAGATGTCTCAAATCCCATTAACAACAGTGCCATTCAAGAGCATTTAGCTGGAGGAAGGCCAATTGCTTCTGCTGATTCACTTGCTGATAGAATAGGCCTTCAAGATAATCTGCAGAGTTCAGCAGCTTTGTCTCATTCAATGAGTGCATTGGAGGCACTGGGGCCATACATCTTCAATAATTGGCAAGATACATCAAACCCTTTGGCTGCAACTTTTGGTGATCATGCCTATGATGAATTATCAGGTATTCAGAAGTGGAATGTGAGCAAGTTTCTGAAAGCTCCAGAGGCCAATGGGACTGAGATCCAGGCTTATTCTTCCATAGGAAACCTGGTTCAAAATGGATGGACATCATCAAATGTTGCAAGCTTGGGCAATTTTGCCTTTAATTCCTCTAATTGTAGTAAAGAGCTGTCACTAAGTCTTGCAAGATCTCCTCCAACTACAGGTCAGTGCTCAGAGATGAGCTGCTCCAACGCATCTCGTAGCATGAATGGAACAAGTTCAGGCTTGGATCAACCTTCCTGCAGCAGCAAGGAACTGTCTATGAGATTAAGTTCTAACAAACATGTCCAGTTTTCACCAGCAATATTGGGGTCCAGATATCTTGCTGGAGTTCAAGAGATATTTGCTCAAATTGCGACATATTCATTTGAAAATGTAGAGCTGATAAATTATTCAGCTTCTGGTGTTAGAGCAGGAGGAAACAAGTCAGCTTCAGCTTTCACACCAAATAGAAGGGTAGCGAATAATCAAAATGAAAATTCCATTTATGGAGTACATGTAGAAGAATCTCCATCGGAAAGACATGCAGCTGACTCAAACAAATCCCAACTTCTCATGCTTCTACAGCTGGTGGACAATGGATATAGTCAGTGTTTGGATGAGGTTCATACTGTGGTATCTGCATTCCATGCTGCTACTGAGTTGGATCCGCACATGCATGCACATTTTGCACTTCAAACCATCTCTCTCTTATACAAGGACTTGAGAGAGAGGATTAGCAATTGCATTCTTGCCATGGGACCAGATTTTAACAGCTTGTGTTCAGAAGAGGAGAAGGAATGGTCTCTTGAAACTTCATTCATTCAAAAGCAATGGGCTCTGCAGCAGTTGAAGAGAAAAGATCAGCTATGGAGACCCCAAAGGGGCTTGCCAGAGAGATCTGTCTCAGTTCTACGCGCTTGGATGTTTCAGAATTTCCTCCATCCGTATCCTAAAGATGCAGAGAAGCATTTATTGGCAGTAAAAAGTGGGTTGACAAGAAGCCAGGTATCCAATTGGTTTATCAATGCACGTGTTCGGTTATGGAAGCCTATGATTGAAGAAATGTATGCTGAAATGAGTAGAAGAAAAGCTTGTAGAAATGAAGAAGGATTGGAGAGCACTCACAGAAGCAGGATAAACATGAACAGTCAAATGTTGAATATCAATTGA 1713 0.4139 MENNMYSASLDISGRNSAVIEEIAQHLAPKPLIQCYSFDLNNQNHIINGIPVLAAEQGESTSDVHVDGCFINPARIADSNSFVTIQGESIVGDVSNPINNSAIQEHLAGGRPIASADSLADRIGLQDNLQSSAALSHSMSALEALGPYIFNNWQDTSNPLAATFGDHAYDELSGIQKWNVSKFLKAPEANGTEIQAYSSIGNLVQNGWTSSNVASLGNFAFNSSNCSKELSLSLARSPPTTGQCSEMSCSNASRSMNGTSSGLDQPSCSSKELSMRLSSNKHVQFSPAILGSRYLAGVQEIFAQIATYSFENVELINYSASGVRAGGNKSASAFTPNRRVANNQNENSIYGVHVEESPSERHAADSNKSQLLMLLQLVDNGYSQCLDEVHTVVSAFHAATELDPHMHAHFALQTISLLYKDLRERISNCILAMGPDFNSLCSEEEKEWSLETSFIQKQWALQQLKRKDQLWRPQRGLPERSVSVLRAWMFQNFLHPYPKDAEKHLLAVKSGLTRSQVSNWFINARVRLWKPMIEEMYAEMSRRKACRNEEGLESTHRSRINMNSQMLNIN* 571
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu1g0348 570 MobiDBLite consensus disorder prediction 238 267 - -
Pvu1g0348 570 ProSiteProfiles 'Homeobox' domain profile. 468 531 IPR001356 GO:0003677
Pvu1g0348 570 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 10 566 - -
Pvu1g0348 570 PANTHER HOMEOBOX PROTEIN ATH1 10 566 - -
Pvu1g0348 570 CDD homeodomain 471 532 IPR001356 GO:0003677
Pvu1g0348 570 SMART prehox3 283 428 IPR006563 -
Pvu1g0348 570 Pfam Homeobox KN domain 488 527 IPR008422 GO:0003677|GO:0006355
Pvu1g0348 570 Gene3D - 474 553 - -
Pvu1g0348 570 SMART HOX_1 471 535 IPR001356 GO:0003677
Pvu1g0348 570 Pfam Associated with HOX 289 427 IPR006563 -
Pvu1g0348 570 SUPERFAMILY Homeodomain-like 473 540 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu1g0348 Pvu-Chr1 3312014 3315760 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu1g0348 188 544 Homeobox Transcription Factor Family AT4G32980 51.240 2.72e-103 318
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-BELL Pvu1g0348 POX 1.8e-24 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu1g0348 - - gmx:100812648 951.814
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu1g0348 1 3312014 3315760 Pvu1g0348 1 3312014 3315760 ECH
Pvu1g0348 1 3312014 3315760 Pvu9g0792 9 12618368 12621886 PCT