Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu1g0317 ATGAAGTCCATGAATGATGGCAACACTGATGATGGGAACAATCATAACTGGTTGGGGTTCTCTCTCTCACCCCACATGAAAATGGAAATTGCTTCTTCTGCTGACCCTCCTCATCACCATCATCATCACTACTATCATCACCCTCAGGTTTCTGCTGCTGCAGCACCTTGCAACACTGTTCCAACAAACTTCTATACCTCACACCTTAACACCTCAGGAATCTGCTATGGTGTTGGAGAAAACAGTGCCTTTCACCCTCCCTTGGCCATGATGCCCCTCAAGTCAGATGGGTCACTTTGCATTATGGAAGCTTTCACCAGATCACAAACCCAAGTGATGGTGCCAACTACATCCCCAAAACTCGAGGACTTCCTTGGTGGTGCAAGTATGGGAGCTCAAGACTATGGAGGACATGAAAGAGAAGCAATGGCTCTAAGCCTAGACAGCATCTACTATAGTAGCCAGAATGCAGAACCTGAAGCCAACAGAGACCATCCTTCTTCTTTGGGCCTTCTTTCTGACCCCTTCAGGCAACAAACCCATCCATATTACTCGGGGCTTGGGATTTACCAAGTGGAGGAGGAAGCAAAGCAACCCAACGTGACAGTTTGCAGCTCCCAAATGCCTCAAGTGGTGGAAGAAGGCATTGCATGCTTCAAAAACTGGGTGCCCCAAAGGGGATATTCTTCCTCTCAGCAGAATCTGGAGCAGCAGCATCAAGTGAATAACAGTATGGGGGAGAATCACGGTGCTTCTGGGAATGTTGGTGCTGGTGTTGGTTGTGGGGAGTTGCAGTCTTTGAGTTTGTCTATGAGTCCTGGTTCTCAATCTAGCTGTGTCACAGTTCCAACTCAGATCTCATCTTCTGGGACTGAATCAGTGGTTGGGGATGCCAAAAAGAGAGGTTCTGCTAAGCTCGGCCAGAAGCAACCTGTGCATAGGAAATCCATTGACACATTCGGCCAGAGAACTTCTCAGTATAGAGGTGTCACAAGGCATCGATGGACTGGAAGATATGAAGCACATTTGTGGGATAATAGCTGCAAGAAGGAAGGGCAAACCAGGAAAGGACGACAAGTTTATTTGGGTGGTTATGATATGGAAGAGAAAGCTGCAAGAGCATATGATCTTGCGGCTCTCAAGTATTGGGGACCTTCAACGCACATAAACTTCCCGCTAGAAAATTACCAAACTGAACTTGAAGAAATGAAGAATATGAGCAGGCAGGAATATGTGGCCCACTTGAGAAGAAAGAGTAGTGGGTTTTCAAGGGGTGCCTCAATGTACAGAGGAGTGACAAGACACCATCAACATGGCAGGTGGCAAGCAAGGATAGGCAGAGTTGCAGGAAATAAGGACCTTTATCTTGGGACATTCAGTACTCAAGAGGAAGCAGCTGAAGCATATGACGTAGCTGCAATCAAGTTTCGTGGGGTGAATGCTGTGACCAACTTTGACATCTCAAGATACGATGTTGAGAGGATCATGGCCAGCAACACCCTTCTTGCTGGAGAGTTGGCAAGAAGAAACAAGGAGAGTGAGCCAAGAACTGAGGCCACAGAGTACAACGTTGTGTCAAGCCAACAAGCCATAAGCAGCAGCAGGGAAGAAGCTGAGACTGTGAACAACAATGACAATAATGAGAAGGGATCATCATCAGATTGGAAGATGGGTTTGTATCATCAACAACAGTCAAACAGCAACAACTGTGACATGAAAACCATGAAGTGTGGAAATTATAGAGGTTCTGCTTTCTCTGTGTCCCTACAAGATCTCATTGGGATTGACTCAGTAGGATCTAGCCAGGCCATGCTGGAGGAGTCTACTAAGATAGGCACTCATTTTTCAAACCCCTCCTCGCTGGTCACCAGTTTAAGCAGCTCAAGGGAAGGTAGCCCTGACAAAACGGGTCCCACTGTGCTCTTTCCAAAGCCTCCGGTGGGGTCAAAGGTTGTCACTAGCCCTATTGCTAATGGTGTAAGTGTTGGCTCTTGGTTTCCCTCTCAAATGAGGCCAGTGGCAATGTCTCACTTGCCAGTTTTTGCTGCATGGAGTGATACCTAG 2064 0.4714 MKSMNDGNTDDGNNHNWLGFSLSPHMKMEIASSADPPHHHHHHYYHHPQVSAAAAPCNTVPTNFYTSHLNTSGICYGVGENSAFHPPLAMMPLKSDGSLCIMEAFTRSQTQVMVPTTSPKLEDFLGGASMGAQDYGGHEREAMALSLDSIYYSSQNAEPEANRDHPSSLGLLSDPFRQQTHPYYSGLGIYQVEEEAKQPNVTVCSSQMPQVVEEGIACFKNWVPQRGYSSSQQNLEQQHQVNNSMGENHGASGNVGAGVGCGELQSLSLSMSPGSQSSCVTVPTQISSSGTESVVGDAKKRGSAKLGQKQPVHRKSIDTFGQRTSQYRGVTRHRWTGRYEAHLWDNSCKKEGQTRKGRQVYLGGYDMEEKAARAYDLAALKYWGPSTHINFPLENYQTELEEMKNMSRQEYVAHLRRKSSGFSRGASMYRGVTRHHQHGRWQARIGRVAGNKDLYLGTFSTQEEAAEAYDVAAIKFRGVNAVTNFDISRYDVERIMASNTLLAGELARRNKESEPRTEATEYNVVSSQQAISSSREEAETVNNNDNNEKGSSSDWKMGLYHQQQSNSNNCDMKTMKCGNYRGSAFSVSLQDLIGIDSVGSSQAMLEESTKIGTHFSNPSSLVTSLSSSREGSPDKTGPTVLFPKPPVGSKVVTSPIANGVSVGSWFPSQMRPVAMSHLPVFAAWSDT* 688
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu1g0317 687 Pfam AP2 domain 326 384 IPR001471 GO:0003700|GO:0006355
Pvu1g0317 687 Pfam AP2 domain 429 478 IPR001471 GO:0003700|GO:0006355
Pvu1g0317 687 MobiDBLite consensus disorder prediction 519 555 - -
Pvu1g0317 687 MobiDBLite consensus disorder prediction 508 555 - -
Pvu1g0317 687 SUPERFAMILY DNA-binding domain 427 488 IPR016177 GO:0003677
Pvu1g0317 687 MobiDBLite consensus disorder prediction 290 314 - -
Pvu1g0317 687 ProSiteProfiles AP2/ERF domain profile. 428 486 IPR001471 GO:0003700|GO:0006355
Pvu1g0317 687 ProSiteProfiles AP2/ERF domain profile. 326 392 IPR001471 GO:0003700|GO:0006355
Pvu1g0317 687 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ANT 13 685 - -
Pvu1g0317 687 MobiDBLite consensus disorder prediction 616 634 - -
Pvu1g0317 687 CDD AP2 427 488 IPR001471 GO:0003700|GO:0006355
Pvu1g0317 687 PRINTS Ethylene responsive element binding protein signature 327 338 IPR001471 GO:0003700|GO:0006355
Pvu1g0317 687 PRINTS Ethylene responsive element binding protein signature 468 488 IPR001471 GO:0003700|GO:0006355
Pvu1g0317 687 SMART rav1_2 428 492 IPR001471 GO:0003700|GO:0006355
Pvu1g0317 687 SMART rav1_2 326 398 IPR001471 GO:0003700|GO:0006355
Pvu1g0317 687 SUPERFAMILY DNA-binding domain 325 394 IPR016177 GO:0003677
Pvu1g0317 687 CDD AP2 325 392 IPR001471 GO:0003700|GO:0006355
Pvu1g0317 687 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 13 685 - -
Pvu1g0317 687 MobiDBLite consensus disorder prediction 616 643 - -
Pvu1g0317 687 Gene3D AP2/ERF domain 325 394 IPR036955 GO:0003700|GO:0006355
Pvu1g0317 687 Gene3D AP2/ERF domain 428 488 IPR036955 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu1g0317 Pvu-Chr1 2907733 2912245 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu1g0317 409 687 AP2-EREBP Transcription Factor Family AT4G37750 26.774 4.37e-14 73.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-AP2 Pvu1g0317 AP2 1.6e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu1g0317 K09285 - gmx:100798179 1130.16
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu1g0317 1 2907733 2912245 Pvu1g0317 1 2907733 2912245 ECH
Pvu1g0317 1 2907733 2912245 Pvu9g0763 9 12286871 12290865 PCT