Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu1g0189 ATTGCAACTTTTTCATCTTTCTCTGTTGTTTTACCAATGGGGGTTCAGAATTGTAATGGTTGCAGATCCTGGGAGGACGACATTTACTGGTCTCATTTTCAATTCCTCCATTTCATGCAGTTTCTCAGAGCGGAATATGATCAACACCTTGCACTTCCGAAGACTTTTTCAGATAACTTAAGAAAGAAGCTGCCTGAAAATGTGACCCTTAAGGGTCCTAGTGGTGTTGCGTGGAAAGTAGCGATGATTGCAAGAGGTGATACCTTGTACCTTGCACATGGTTGGGGACAGTTTGTGAAAGATCACTGTTTGAAGGAGAATGATTTCCTGGTCTTCAAGTATAATGGTGAATCTCAGTTTGATGTTTTGGTATTTGATGGGGGGAACTTGTGTGAGAAGGCATGTTCTTATTTTGTTCGAAAATGTGGGCACACAGAAGGTGAACACGTGGGTGGAAGTCTGAACAGGAGAAGGGACACAACAGAAGGTTGTGTGGAAGAAGGACACACCCCTTCAAATGCTGGTGTGAAATGTGCTTCACCTGAGAGATCTGTGCATGCTAATGGTTCGAAGGAGCCAATTAATGTGCCTTTTGAAACTCCTACTCGTAGTGAAGAGGCTTTGAATGCAGATGTTGAATCTGGTGGTGCTGAGCAAGTTAGATCTGTTGGAATCCCTCTGTCAGCTGTTCCCACCGAAACTGCTAATGGGAAAAGGATCAGGAAGCTTGTTTCAGCTGTTAAACATGTCCAGACCAAGCGCAGGGGCAGACCAGCTAAAGTGTCTCATGTTATGGAAAGAGCAAAAATTGATTTATGTGCCCTGAACTCTACATCAGATAATTTGGCTGTTATTGCTTGTGTAGGCTTCTTTTCTGTATGTTTTAAACTCAAATGGGTAGAATCTGGTGAACCTGTTTCTGCAGTTAAAAGTGGGTCATATGAGCTATTTATCTCAAATAGAAGGCCTGTGACAGAAGATGAGATTAAAAATGCCTTTGCATTGGCCCAGGCAGAGCGTACTGAAGACGGTTTGGTTATAGTTATGCGACCATCGCACGTGTACAAGAGATTCTTCGTGTCAATGCCTAACAAGTGGATAGGGGAGCACATCAGTCCAATGTCTCAAGATGTGATACTGCGCATGGGCAAGGGTGAATGGATTGCTAGATACAGCTACCACAATATTCGTCATACTGGTGGATTCACTGGTGGGTGGAAACACTTTGTGTTGGACAACAACCTTGAAGAGTATGATGTTTGTGTCTTTAAACCAGCTGGTCAAATGAACGAAACCATGGTCATTGATATGGCCATTTTCAGAGTTGTTCAGGAGACTGTTCCTCTTTCTGTCATGTCCCCATCTGGAAAAAGAGCTAGAAAATCAGCACAGAATGCTAATCTGACTGAAACATAG 1416 0.4308 IATFSSFSVVLPMGVQNCNGCRSWEDDIYWSHFQFLHFMQFLRAEYDQHLALPKTFSDNLRKKLPENVTLKGPSGVAWKVAMIARGDTLYLAHGWGQFVKDHCLKENDFLVFKYNGESQFDVLVFDGGNLCEKACSYFVRKCGHTEGEHVGGSLNRRRDTTEGCVEEGHTPSNAGVKCASPERSVHANGSKEPINVPFETPTRSEEALNADVESGGAEQVRSVGIPLSAVPTETANGKRIRKLVSAVKHVQTKRRGRPAKVSHVMERAKIDLCALNSTSDNLAVIACVGFFSVCFKLKWVESGEPVSAVKSGSYELFISNRRPVTEDEIKNAFALAQAERTEDGLVIVMRPSHVYKRFFVSMPNKWIGEHISPMSQDVILRMGKGEWIARYSYHNIRHTGGFTGGWKHFVLDNNLEEYDVCVFKPAGQMNETMVIDMAIFRVVQETVPLSVMSPSGKRARKSAQNANLTET* 472
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu1g0189 471 MobiDBLite consensus disorder prediction 163 198 - -
Pvu1g0189 471 Gene3D - 324 445 IPR015300 -
Pvu1g0189 471 SUPERFAMILY DNA-binding pseudobarrel domain 33 126 IPR015300 -
Pvu1g0189 471 SMART B3_2 38 128 IPR003340 GO:0003677
Pvu1g0189 471 SMART B3_2 345 443 IPR003340 GO:0003677
Pvu1g0189 471 PANTHER BINDING PROTEIN, PUTATIVE-RELATED 315 449 - -
Pvu1g0189 471 PANTHER BINDING PROTEIN, PUTATIVE-RELATED 17 181 - -
Pvu1g0189 471 SUPERFAMILY DNA-binding pseudobarrel domain 346 433 IPR015300 -
Pvu1g0189 471 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS11G0197600-RELATED 315 449 IPR044837 -
Pvu1g0189 471 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS11G0197600-RELATED 17 181 IPR044837 -
Pvu1g0189 471 ProSiteProfiles B3 DNA-binding domain profile. 35 128 IPR003340 GO:0003677
Pvu1g0189 471 CDD B3_DNA 50 126 IPR003340 GO:0003677
Pvu1g0189 471 Pfam B3 DNA binding domain 48 124 IPR003340 GO:0003677
Pvu1g0189 471 Pfam B3 DNA binding domain 347 435 IPR003340 GO:0003677
Pvu1g0189 471 ProSiteProfiles B3 DNA-binding domain profile. 345 443 IPR003340 GO:0003677
Pvu1g0189 471 CDD B3_DNA 345 441 IPR003340 GO:0003677
Pvu1g0189 471 Gene3D - 31 131 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu1g0189 Pvu-Chr1 1578240 1581243 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu1g0189 16 441 REM Transcription Factor Family AT4G33280 29.797 5.05e-65 213
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Pvu1g0189 B3 5.9e-12 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu1g0189 - - pvu:PHAVU_001G018400g 967.607