Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu1g0178 ATGGGGAGAGAGCTACCCCAGTCTCTTTGCCTAACCGATATGGAGCCAGACAGAATCAGTTACTTGCCAGGTCATGTAATAGACCAAATTTTGTCGCATTTGTCAATTAAGGAGGCAGTGAGAACAAGTGTTTTATCTAGCAAATGGAGGTACAGATGGGCCACGCTACCGAATCTTGTGTTCGATGGCCAATGTGTCTCTGTGGCTGCTCAGGACCATGTGATTATCAAGAACAAGCTTTTGAGAACTGTTGATCATGTACTGCTACTTCATTCTGGGTCAATCAACAAGTTCAAACTCTCCCATCGTGATCTCCTAGGTGTGGCTGATATTGATCGTTGGACGCTTCATTTATGCAGAAAGTCTGTTAAAGAGTTTGTGCTGGAAATCTGGAAAGGACAGCGGTATAAGATACACTCGTGTTTGTTTTGTTGTCAAAGTTTGACTCATTTAGAGTTGTTTAATTGTTGGCTTAAACCTCCATCTACATTTAAAGGCTTCAGGAACTTAAAGAGTCTTGATCTGCAACATGTTACCTTGGCTCAGGATGTTTTTGAAAACTTAATATCCAGCTGCCCAGTGCTTGAACGGTTGACATTGATGAACTTTGATGGTTTCACTCATCTTAATATTGATGCACCGAATCTCCTTTTCTTTGACATTGGGGGTAAATTTGAAGATATTAGCTTTGAGAACACTTCCCAATTAGCTGTGGTATCCATTGGCTTGTATGTGAACTTTGAAATCAATCAAAGTAGATTTCGTGGAGGCTCTAGCAATTTGCTCAAATTTTTTCTTCATCTGCCTCACGTGCAAAGGCTAGAGGTTCAAAGCTATTTTTTAAAGTATTTGGCAGTGGGGGTTGTGCCAGTAAATCTTCCAAGACCATGCATTGATCTAAGTTATCTTTCCATACGAATAAACTTTAATGATTTGAAGGAAATCTCAGCTGCTCTTTGCCTCTTAAGAAGCTCTCCTAATCTACAAGAACTAGAAATATTGGCTCGACCAGAGGAGCAGACTGTTCTGGTAACACACGCCTATTCTTGGGAAGATGTGTATTTTGCTTGTCCAGAGATGCATCTGCGAAATGTGAAGATAGATGGCATATCTGGAATCAAACCTGAATTAGATTTTATCAGTTTTCTACTTCTATACTCTCCTGTGTTGGAAAGGATGATTGTGAAGCCTGTTTCAAACATCGGAACAGAACTGATGAAAGAACTGTTGCGGTTCAGAAGAGTCTCAAGACAAGCTGAAATTGTTTACCTGGACTCCTCTTAG 1284 0.4042 MGRELPQSLCLTDMEPDRISYLPGHVIDQILSHLSIKEAVRTSVLSSKWRYRWATLPNLVFDGQCVSVAAQDHVIIKNKLLRTVDHVLLLHSGSINKFKLSHRDLLGVADIDRWTLHLCRKSVKEFVLEIWKGQRYKIHSCLFCCQSLTHLELFNCWLKPPSTFKGFRNLKSLDLQHVTLAQDVFENLISSCPVLERLTLMNFDGFTHLNIDAPNLLFFDIGGKFEDISFENTSQLAVVSIGLYVNFEINQSRFRGGSSNLLKFFLHLPHVQRLEVQSYFLKYLAVGVVPVNLPRPCIDLSYLSIRINFNDLKEISAALCLLRSSPNLQELEILARPEEQTVLVTHAYSWEDVYFACPEMHLRNVKIDGISGIKPELDFISFLLLYSPVLERMIVKPVSNIGTELMKELLRFRRVSRQAEIVYLDSS* 428
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu1g0178 427 SMART 9598neu4hmm 356 424 IPR006566 -
Pvu1g0178 427 SUPERFAMILY RNI-like 120 333 - -
Pvu1g0178 427 Gene3D Ribonuclease Inhibitor 86 427 IPR032675 -
Pvu1g0178 427 SUPERFAMILY F-box domain 15 59 IPR036047 GO:0005515
Pvu1g0178 427 PANTHER F-BOX/RNI/FBD-LIKE DOMAIN PROTEIN 13 393 - -
Pvu1g0178 427 Pfam F-box domain 20 51 IPR001810 GO:0005515
Pvu1g0178 427 PANTHER F-BOX PROTEIN-LIKE 13 393 - -
Pvu1g0178 427 Pfam Leucine Rich Repeat 169 193 IPR013101 -
Pvu1g0178 427 ProSiteProfiles F-box domain profile. 16 50 IPR001810 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu1g0178 Pvu-Chr1 1445943 1449204 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu1g0178 17 216 EF-hand Containing Proteins AT5G41840 27.803 2.47e-09 57.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu1g0178 - - gmx:100782183 769.229
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu1g0178 1 1445943 1449204 Pvu1g0178 1 1445943 1449204 ECH