Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu1g0172 ATGGCCATAACCTCTCTACTCTTCCACCTTCTACCCTTTCTACTATTAGGTAATGTAGCATCTGACACGGTGTTTTATCTGGAGAATCATTGCAGTCACACAGTTTGGCCGGGGACACTTTCCGGCAACGGCGCCGCCGTTCTCGGTTCCGGCGGTTTTGCCCTGCCGCCTGGTTCTTCGGTCCACTTCTCAGCGCCGTCCGGCTGGTCCGGCCGCTTCTGGGGCCGGACCGGCTGCACCTTCGATGAATCCGGCGTCGGGAGTTGCGCCACCGGAGACTGCGCCGGAGGCTTGAAATGCAACGGCGGAGGAGTCCCGCCGGTGACGCTGGTGGAGTTCACCACCGGAAGCTCCGGCAACGGCAACAAGGACTTCTACGACGTGAGTCTCGTGGACGGTTACAACGTGGGAATGGGAGTGAGGGCTACCGGGGGAACCGGTGACTGCAGGTACGCGGGGTGCGTGGCGGATCTCAACGGCGCGTGTCCGACGGAGCTTCAGGTTAGAGACGGCGGCGGCGCGGTTGTGGCGTGCAAGAGCGCGTGCGCGGCGTTTAACACGGCGGAATTTTGCTGCACCGGCGACCACGGGACGCCACAAACGTGTTCGCCGACACATTATTCGGAGATTTTCAAGAGTGCGTGTCCGACAGCGTATAGTTACGCATACGATGATGCTTCAAGCACTTTCACTTGCTCCAATTCTGATTATGTTATCACTTTCTGTTCCATGGGATCATCATCTTAA 747 0.585 MAITSLLFHLLPFLLLGNVASDTVFYLENHCSHTVWPGTLSGNGAAVLGSGGFALPPGSSVHFSAPSGWSGRFWGRTGCTFDESGVGSCATGDCAGGLKCNGGGVPPVTLVEFTTGSSGNGNKDFYDVSLVDGYNVGMGVRATGGTGDCRYAGCVADLNGACPTELQVRDGGGAVVACKSACAAFNTAEFCCTGDHGTPQTCSPTHYSEIFKSACPTAYSYAYDDASSTFTCSNSDYVITFCSMGSSS* 249
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu1g0172 248 SUPERFAMILY Osmotin, thaumatin-like protein 24 242 IPR037176 -
Pvu1g0172 248 ProSitePatterns Thaumatin family signature. 85 100 IPR017949 -
Pvu1g0172 248 SMART tha2 25 243 IPR001938 -
Pvu1g0172 248 Gene3D Thaumatin 24 242 IPR037176 -
Pvu1g0172 248 PRINTS Pathogenesis-related protein signature 24 36 IPR001938 -
Pvu1g0172 248 PRINTS Pathogenesis-related protein signature 72 83 IPR001938 -
Pvu1g0172 248 PRINTS Pathogenesis-related protein signature 85 114 IPR001938 -
Pvu1g0172 248 PRINTS Pathogenesis-related protein signature 233 242 IPR001938 -
Pvu1g0172 248 ProSiteProfiles Thaumatin family profile. 22 242 IPR001938 -
Pvu1g0172 248 Pfam Thaumatin family 29 242 IPR001938 -
Pvu1g0172 248 PANTHER PATHOGENESIS-RELATED PROTEIN 5 20 243 - -
Pvu1g0172 248 PIRSF PR5 1 248 IPR001938 -
Pvu1g0172 248 CDD TLP-PA 24 242 - -
Pvu1g0172 248 PANTHER OS03G0233200 PROTEIN 20 243 IPR001938 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu1g0172 Pvu-Chr1 1396156 1397724 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu1g0172 5 248 Receptor kinase-like Gene Family AT5G38280 45.817 9.77e-65 211
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu1g0172 - - gmx:100809378 426.402
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu1g0172 1 1396156 1397724 Pvu1g0172 1 1396156 1397724 ECH