Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu1g0171 ATGGCCCTAAACCCAAACTCAAAAGTCTTTGCACTTATCCTCTTCTTATTAGGTAATGTAGTATCTGGCGCAGTGTTTACCCTTCAAAACCGTTGCAGTTACACAGTTTGGCCAGGGACACTTTCCGGCAACGGCGTCGCCACTCTCGGCGACGGCGGTTTTCCTCTGGAGCCAGGTGCGGAGGTTCAGCTCACCGCACCGTCCGGCTGGTCCGGCCGGATCTGGGCCAGGACCGGCTGCAGCTTCGACGGTTCCGGCATCGGAACATGCGCCACCGGAGACTGCGCCGGGGGACTGAGGTGCACCGGAGGAGGCGTTCCGCCAGCGACTCTGGCGGAGTTCACTATCGGATTCGCCGGTAACGGCGACAAGGACTTCTACGACGTTAGTCTCGTGGACGGTTACAATGTAGGCATCGGCGTGCTGGCTACCGGAGGAACCGGTGACTGCCGGTACGCGGGGTGCGCGGCGGACTTGAACGCTGCGTGTCCAGAGGAGTTGCAAGTGAGAGACAGCGGCGGCGTGGTGGTGGCGTGCAAGAGCGCGTGCGCCGCATTTAACACGCCGGAGTTTTGCTGCACCGGCGAGCACGGGACGCCGCAAACGTGTTCGGCGACACACTATTCAGAGATTTTCAAGAATGCGTGTCCAACAGCGTACAGTTACGCTTACGATGATGCTTCCAGCACTCGCACCTGTTCTACAGCTGATTACGTTATTGCCTTTTGCCCTTAA 735 0.5891 MALNPNSKVFALILFLLGNVVSGAVFTLQNRCSYTVWPGTLSGNGVATLGDGGFPLEPGAEVQLTAPSGWSGRIWARTGCSFDGSGIGTCATGDCAGGLRCTGGGVPPATLAEFTIGFAGNGDKDFYDVSLVDGYNVGIGVLATGGTGDCRYAGCAADLNAACPEELQVRDSGGVVVACKSACAAFNTPEFCCTGEHGTPQTCSATHYSEIFKNACPTAYSYAYDDASSTRTCSTADYVIAFCP* 245
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu1g0171 244 CDD TLP-PA 25 243 - -
Pvu1g0171 244 PRINTS Pathogenesis-related protein signature 25 37 IPR001938 -
Pvu1g0171 244 PRINTS Pathogenesis-related protein signature 73 84 IPR001938 -
Pvu1g0171 244 PRINTS Pathogenesis-related protein signature 86 115 IPR001938 -
Pvu1g0171 244 PRINTS Pathogenesis-related protein signature 234 243 IPR001938 -
Pvu1g0171 244 Pfam Thaumatin family 30 244 IPR001938 -
Pvu1g0171 244 PIRSF PR5 3 244 IPR001938 -
Pvu1g0171 244 Gene3D Thaumatin 24 244 IPR037176 -
Pvu1g0171 244 SUPERFAMILY Osmotin, thaumatin-like protein 24 244 IPR037176 -
Pvu1g0171 244 PANTHER PATHOGENESIS-RELATED PROTEIN 5-RELATED 12 244 - -
Pvu1g0171 244 SMART tha2 26 244 IPR001938 -
Pvu1g0171 244 ProSiteProfiles Thaumatin family profile. 23 244 IPR001938 -
Pvu1g0171 244 ProSitePatterns Thaumatin family signature. 86 101 IPR017949 -
Pvu1g0171 244 PANTHER OS03G0233200 PROTEIN 12 244 IPR001938 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu1g0171 Pvu-Chr1 1391595 1393584 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu1g0171 7 244 Receptor kinase-like Gene Family AT5G38280 44.898 5.07e-62 204
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu1g0171 - - gmx:100808830 414.846