Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu1g0152 ATGTTTCATCACTGGAGCAGTTCACATCAACAGGAAAGCAGCGAGCTTCATGCTGAATCAAAGATGAAGGAGCTGAAGGGTGCAATTGGACCCTTATCAGGGCACAGTTTGAAGTATTGCACTGATGCATGTTTGAAGAGATATTTGGAAGCTCGAAACTGGAATGTAGACAAGTCCAAGAAGATGTTGGGGGAGACCCTGAAGTGGAGATCAACCTATAAACCAGAGGAAATTCGCTGGCAAGAGGTTGCAATGGAAGGGGAGACTGGGAAATTGTATAGAGCAAGTTTTCGTGACAGACAAGGAAGAAGTGTTCTTATTCTGAGACCAGGAATGCAGAACACTACTTCGATGGAGAATCAGATGAGGCATTTTGTGTATATTTTGGAAAACGCCTTGCTTGATCTTCCACCGGGTCAAGAACAAATGGCATGGTTGATAGACTTCACTGGGTGGTCAATAACCAACAATGTGCCCTTGAAATCAGCCAGAGAAACCATCAACATTTTGCAGAACCATTACCCTGAGAGGCTTGCCGTAGCATTTCTTTACAACCCCCCAAGAGTTTTTGAAGCCTTTTGGAAGATAGTTAAGTACTTCTTGGATAGCAAGACATTTCAGAAGGTGAAGTTTGTGTACCCAAAGAACAAAGATAGTGTGGAGCTCATGAAGTCCTATTTTGATGAGGAAAACCTTCCCCAAGAACTAGGTGGAAAAAGCACAATGCGTTATAACCATGAAGAGTTCTCCAGATTAATGGTTCAGGATGATTTGAAATGTGCAGCATTTTGGGGATCTGATGAGAAGCTCTCAAACCACATTGCTAATGGCCATTCTGCAGCAGTTTTCAATGCAACCTCTCCTGACACATGTTAA 876 0.4292 MFHHWSSSHQQESSELHAESKMKELKGAIGPLSGHSLKYCTDACLKRYLEARNWNVDKSKKMLGETLKWRSTYKPEEIRWQEVAMEGETGKLYRASFRDRQGRSVLILRPGMQNTTSMENQMRHFVYILENALLDLPPGQEQMAWLIDFTGWSITNNVPLKSARETINILQNHYPERLAVAFLYNPPRVFEAFWKIVKYFLDSKTFQKVKFVYPKNKDSVELMKSYFDEENLPQELGGKSTMRYNHEEFSRLMVQDDLKCAAFWGSDEKLSNHIANGHSAAVFNATSPDTC* 292
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu1g0152 291 SMART CRAL_TRIO_N_2 41 66 IPR011074 -
Pvu1g0152 291 SMART sec14_4 86 241 IPR001251 -
Pvu1g0152 291 MobiDBLite consensus disorder prediction 1 21 - -
Pvu1g0152 291 PANTHER RANDOM SLUG PROTEIN 5-LIKE 8 283 - -
Pvu1g0152 291 ProSiteProfiles CRAL-TRIO lipid binding domain profile. 80 244 IPR001251 -
Pvu1g0152 291 PANTHER GH16843P 8 283 - -
Pvu1g0152 291 Pfam CRAL/TRIO, N-terminal domain 39 63 IPR011074 -
Pvu1g0152 291 Gene3D - 1 271 IPR036865 -
Pvu1g0152 291 SUPERFAMILY CRAL/TRIO N-terminal domain 19 82 IPR036273 -
Pvu1g0152 291 SUPERFAMILY CRAL/TRIO domain 80 254 IPR036865 -
Pvu1g0152 291 Pfam CRAL/TRIO domain 98 238 IPR001251 -
Pvu1g0152 291 CDD SEC14 98 239 IPR001251 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu1g0152 Pvu-Chr1 1251214 1254314 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu1g0152 45 233 Acyl Lipid Metabolism Gene Families AT1G55840 28.638 3.31e-12 63.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu1g0152 - - gmx:100790867 513.842
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu1g0152 1 1251214 1254314 Pvu1g0152 1 1251214 1254314 ECH