Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu1g0141 ATGAGTTGGAGAACCATAGCTTCCACTTCAAGACACACATTCAAGAGACTCAATGCCATCTTCCGATCCCATTCCACCACCTTCCCTTCACCGCACCACTCACGCGCCTTCCTTCACGCGCCGTTCACCACCACCACCCTTCACTCCGCCCAACCCACCAACGCCCTCATCGACCCCAAGGTCCATGCGACGCACAATGACGCCTTCGTCGACGATGAAGACACGACGAACGAGTTTCTATCGCGATTTGTGTGGATAATGAGGAAGAAGGTGCAGGAAGCGTACCCGGAATGCGACAAGGCCACCGTGGATGGAATGCTCGTGGCGATCGTGGAGAGGGTTACGTCGGAGATGGAAAAGGGCGGGGGAGTTCAAACGGCGGCGTCGGGTTCCGGGGATTTCAGCGAGGATTTGTGGGGAACGGTGTGGGAGGTGAGCAATTTGGTGTTGCAGGATATGGACAAGGAGAGGAAGAAGGAGAAGATGAAGGGCTTCTTGCAGTGTGAAGAGGTTAAGGAAATGTGCAGATTCGCCGGGGAAGTTGGCATTCGCGGCGATTTGCTTAGGGAGCTTAGGTTCAAGTGGGCGCGTGAGAAGATGGAGGAGCGTGAATTCTACGAGGGTTTGGAGAGAATAAAGAAGGAGGCACAGAATGAGAAGGAAAGAGATGTTGGTGAGGAGGGGAAGAAGGAGAAGGTTGATGTTGGACTTCCCAAGAGGAAAGGGAAGATAAGGTACAAGATTTATGGGCTTGATCTCTCTGATCCCAAGTGGGCACAAGTGGCTGATAGGATCCATGAGGCAGAGGAGGTGTTTTGGCCGCAGGAGCCGAAGGCAATAACGGGGAAAGCGAAGATTGTTAGGTCGAAGATTCTGTCATTGAAGGAGGATGATGATGGTTTGCAAAGCCTGTTGGATGAGTGGATGGAGCTTGTTCAACCTAGCAGGGTGGAATGGATAGATTTGCTTGATAACCTGAAAGAGCAGAATCGTAGTTTGTACTTGAAGGTGGCTGAAATGTTATTGACTGAAGATTCTTTCCAAACAAATGTCTCTGACTACTCTAGGCTTATTGATATCTATGCTAAAGAGGACTGTTTTGATGATGTTGAGAGATTGGTGAAGAAGATGAGCGAAAATGGTATACAAATAGATGCTTCAACGGCCAGTGTGTTGGTCCACATGTACTGCAAGGGAGGCAATCTTGCCCGTGCAAATGAGGCATTTGAAATCTTGACGGGCCTAGGTTTCCGACCGGACTTCCAAGTCTACAACTCAATGATCATGGCATTTGTGAATAATGGCCAGCCTAATTTGGCCGACAAATTGATGAGGGAGATGGATACGGGAAATATTAAACCCACGGAGGAAATGTACATGGCAATGCTCCGATCTTTTTCTCAACTTGGTGATACTAAAGGAGCTGACCGAATTTCATTCGCTATGCAGTTTGCTGGGTTCCAGCAGAGTATGGAGGCATGCACCCTACTTATTGAGGCAAATGCACTCACTGGTGACCCTTATCAGGCAAGACACCATTTTGACTACATGATAAAACTTGGGAATAGGCCTGATGATCGCTGCACTGCTAGCATGATTGCAGCTTATGAGAAGAAAAACTACTTGGACGATGCATTGAATCTTCTTTTGCAGTTAGAGGGGGATGGGTTTGAGCCTGGGGTAGCCACTTATTCTGTTCTTGTGGACTGGTTGGGTAAGTTGCACCTTGTTGATGAAGCTGAGCAGCTTTTAGGAAAAATAGCTTTGCTGGGTGAGGCTCCTCCTTTTAAGCTTCAAGTGAGTCTCTGCGATATGTATGCAAGGGCTGGAAATGAGAAGAAGGCCCTTCAAATTCTAGGTGTTCTGGAATCTAGGAAGGATGAATTAGGACAAGCTGATTTTGAGAGAATTATAAGTGGCCTTATTGATGGTGGGTTTCAGCAGGATGCACAAAGAATATGTCGGATCATGGAGGAACGGGGTTTTGATGCATCAAGGGTTAAGGTTAACCTTTTGAAGCCTGTCCCCAGAGCACGTAGTATGAGATAG 2049 0.4797 MSWRTIASTSRHTFKRLNAIFRSHSTTFPSPHHSRAFLHAPFTTTTLHSAQPTNALIDPKVHATHNDAFVDDEDTTNEFLSRFVWIMRKKVQEAYPECDKATVDGMLVAIVERVTSEMEKGGGVQTAASGSGDFSEDLWGTVWEVSNLVLQDMDKERKKEKMKGFLQCEEVKEMCRFAGEVGIRGDLLRELRFKWAREKMEEREFYEGLERIKKEAQNEKERDVGEEGKKEKVDVGLPKRKGKIRYKIYGLDLSDPKWAQVADRIHEAEEVFWPQEPKAITGKAKIVRSKILSLKEDDDGLQSLLDEWMELVQPSRVEWIDLLDNLKEQNRSLYLKVAEMLLTEDSFQTNVSDYSRLIDIYAKEDCFDDVERLVKKMSENGIQIDASTASVLVHMYCKGGNLARANEAFEILTGLGFRPDFQVYNSMIMAFVNNGQPNLADKLMREMDTGNIKPTEEMYMAMLRSFSQLGDTKGADRISFAMQFAGFQQSMEACTLLIEANALTGDPYQARHHFDYMIKLGNRPDDRCTASMIAAYEKKNYLDDALNLLLQLEGDGFEPGVATYSVLVDWLGKLHLVDEAEQLLGKIALLGEAPPFKLQVSLCDMYARAGNEKKALQILGVLESRKDELGQADFERIISGLIDGGFQQDAQRICRIMEERGFDASRVKVNLLKPVPRARSMR* 683
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu1g0141 682 Coils Coil 206 226 - -
Pvu1g0141 682 Pfam Pentatricopeptide repeat domain 372 434 IPR002885 -
Pvu1g0141 682 Gene3D Tetratricopeptide repeat domain 482 680 IPR011990 GO:0005515
Pvu1g0141 682 PANTHER PROTEIN NUCLEAR FUSION DEFECTIVE 5, MITOCHONDRIAL 18 671 - -
Pvu1g0141 682 Gene3D Tetratricopeptide repeat domain 411 481 IPR011990 GO:0005515
Pvu1g0141 682 Gene3D Tetratricopeptide repeat domain 302 410 IPR011990 GO:0005515
Pvu1g0141 682 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 385 419 IPR002885 -
Pvu1g0141 682 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 420 454 IPR002885 -
Pvu1g0141 682 PANTHER OS07G0661900 PROTEIN 18 671 IPR044657 -
Pvu1g0141 682 TIGRFAM PPR: pentatricopeptide repeat domain 354 386 IPR002885 -
Pvu1g0141 682 TIGRFAM PPR: pentatricopeptide repeat domain 423 455 IPR002885 -
Pvu1g0141 682 Pfam PPR repeat 531 557 IPR002885 -
Pvu1g0141 682 Pfam PPR repeat 563 587 IPR002885 -
Pvu1g0141 682 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 350 384 IPR002885 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu1g0141 317 672 Glycosyltransferase AT1G05670 24.719 1.75e-28 119
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu1g0141 - - gmx:100801933 1009.59
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu1g0141 1 1156834 1159476 Pvu1g0141 1 1156834 1159476 ECH