Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu1g0088 ATGTCGGTGGCTGAAACTGCTTGTTCGTACGCATCTCTCATCCTTCACGATGAAGGCATCTCCGTCAGTGAAGACAATATCGTCACCTTGTTGAAAACTGCGAAGGTTCAAGTCGATTCTTTTTGGCCTACCCTGTTTGCTAAACTTGCCCAGAAGAAAAATCTTGGCGACTTGATAGCAAATGCTGCGGGTGGTGGGGCACCAGTTGCTGTTGCAGCTGCCCCGGTGGGTGCTGCAGGTGGAGGTGCTGCTGCCGCCGCCGCCGCCCCTGCTGCTGAGGAGAAAAAGAAGGAAGAACCTGAAGAAGAGAGTGATGATGATATGGGATTCGGCTTGTTCGATTAG 345 0.5217 MSVAETACSYASLILHDEGISVSEDNIVTLLKTAKVQVDSFWPTLFAKLAQKKNLGDLIANAAGGGAPVAVAAAPVGAAGGGAAAAAAAPAAEEKKKEEPEEESDDDMGFGLFD* 115
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu1g0088 114 PANTHER 60S ACIDIC RIBOSOMAL PROTEIN P1 1 107 - -
Pvu1g0088 114 Pfam 60s Acidic ribosomal protein 22 113 - -
Pvu1g0088 114 Hamap 50S ribosomal protein L12 [rpl12]. 6 114 IPR027534 GO:0003735|GO:0005840|GO:0006414
Pvu1g0088 114 MobiDBLite consensus disorder prediction 99 114 - -
Pvu1g0088 114 CDD Ribosomal_P1 5 61 - -
Pvu1g0088 114 Gene3D - 1 62 IPR038716 -
Pvu1g0088 114 MobiDBLite consensus disorder prediction 87 114 - -
Pvu1g0088 114 PANTHER 60S ACIDIC RIBOSOMAL PROTEIN 1 107 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu1g0088 Pvu-Chr1 732706 733742 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu1g0088 1 114 Cytoplasmic Ribosomal Protein Gene Family AT5G24510 50.000 5.93e-36 117
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu1g0088 K02942 - gmx:100791962 123.25