Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu1g0086 ATGCAGTCAAGATATTTACGTGGAATTTCATCAAAAATTCTTTCATATGTTGTTTGCACCCTGCTAAGGAATAACTATTGGCAACAAGTACCTGCTCCCATCCGAACATACAGAAAGGCTGGTTCTGTAGGAAGATCAATTGATGTCACTACTTTCAAGAACTATGAGGAGTTGATCCGTGCAATTGAATGCATGTTTGGACTAGACGATTATGAGAGTGATGTTCTACTTGTTGGGGATGATCCTTGGGAGGAATTTGTGAGCTGTGTTCGATGCATCAGAATTTTATCACCTTCAGAAGTTCAGCAGATGAGTGAAGAGGGAATGAAGCTTCTGAACAGTGGAGCTTTACAAGGGATGAATGTTTGA 369 0.4038 MQSRYLRGISSKILSYVVCTLLRNNYWQQVPAPIRTYRKAGSVGRSIDVTTFKNYEELIRAIECMFGLDDYESDVLLVGDDPWEEFVSCVRCIRILSPSEVQQMSEEGMKLLNSGALQGMNV* 123
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu1g0086 122 Gene3D - 34 105 - -
Pvu1g0086 122 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 8 120 IPR044835 GO:0003677|GO:0006355|GO:0009725
Pvu1g0086 122 PANTHER AUXIN RESPONSE FACTOR 5 8 120 - -
Pvu1g0086 122 Pfam AUX/IAA family 69 103 IPR033389 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu1g0086 Pvu-Chr1 723405 724295 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu1g0086 8 122 B3 DNA Binding Superfamily AT1G19850 57.971 2.20e-44 152
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX or IAA Pvu1g0086 AUX_IAA 6e-07 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu1g0086 K14486 - gmx:100813003 188.348
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu1g0086 1 723405 724295 Pvu1g0086 1 723405 724295 ECH