Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu1g0065 ATGATTCCTGATTCAGAAACAAGCACTTTTAACGAAGCCATGTCAGAGGAAGAAGTGGCACCAAATATCCAGCACTTGTTTCCCTACTCTGATGAAAGCTTCTTCCTTTCAAATACCCTTTTGGAAAACTACATTGATCCAAATGCTGCTTTTCTCTATCCTTCGGAAATTCACTCTCCTTTTGATCCTTTCATTTCACTCCCTCATGAAGATTACAATCATTTCCCCTGCTCAAAACGCCAAAAGCTCTGCTTCGAGGAACAACAAGTACTACTACATTCACAGGACCTTACACCACCAACAATAGATGAGTTTGGTAATTGTTACTCTTTTCAATCTGAAGAGACACAACAGCAGCAATTATTTTGCATGGATGAGGAGAATGGTAAGGAAAGAACCATATATCCACAGAGTGTTGCTGCAAGAGAAAGAAGAAGAAAGATTACGAACAAGACTCAAGAGCTTGGTAAGTTGGTTCCTGGTGGAACAAAAATGAACACAGCTGATATGCTGAATGCAGTTGCAAAGTATGTTAAGTTCCTTCAAGCCCAAGTTGGAATGCTTGAACTCATGAACACACTCGAGAATGAAGATGAAGCAACACCTCCTTCTCAAATTCTACATGCTTTGGTTGTTTCTCCCTTTGTTCAAGAGAAGTTGTATGTGGGGGAAAAGTGCTTTCTGCCAAAAGAAACTGTCACCACTCTGACAAAACTTGAAGATATTCAATCAAAACCTACCATGCTTGAGGAACTTAAACAGCAAATTGGAACAGACCTTAAGAAACCAAAACAAGAATAA 801 0.3945 MIPDSETSTFNEAMSEEEVAPNIQHLFPYSDESFFLSNTLLENYIDPNAAFLYPSEIHSPFDPFISLPHEDYNHFPCSKRQKLCFEEQQVLLHSQDLTPPTIDEFGNCYSFQSEETQQQQLFCMDEENGKERTIYPQSVAARERRRKITNKTQELGKLVPGGTKMNTADMLNAVAKYVKFLQAQVGMLELMNTLENEDEATPPSQILHALVVSPFVQEKLYVGEKCFLPKETVTTLTKLEDIQSKPTMLEELKQQIGTDLKKPKQE* 267
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu1g0065 266 PANTHER TRANSCRIPTION FACTOR BHLH52-RELATED 15 253 - -
Pvu1g0065 266 SMART finulus 138 187 IPR011598 GO:0046983
Pvu1g0065 266 Gene3D - 136 201 IPR036638 GO:0046983
Pvu1g0065 266 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 130 192 IPR036638 GO:0046983
Pvu1g0065 266 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 15 253 - -
Pvu1g0065 266 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 132 181 IPR011598 GO:0046983
Pvu1g0065 266 Pfam Helix-loop-helix DNA-binding domain 142 182 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu1g0065 Pvu-Chr1 526509 527693 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu1g0065 102 260 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G30670 40.000 6.46e-26 100
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Pvu1g0065 HLH 1.8e-05 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu1g0065 - - pvu:PHAVU_001G006100g 442.195