Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu1g0064 ATGGCACTAAGCAAGTTTTTCAACTGGAACACTCTTCAACTTTCCGATTCAGAAACCAGCACCTTTAACGAAGCAATGCCAGAAGAAGTGGCACCAAATATCCAGCACTTGTTTCCCTACTCTGATGAAAGCCTTTTCCTTTCAAATACCCTTTTTGAAAACTACATTGACCCAAATGCTGCTTTTATCTATCCTTCAGAGATTCAGTCTCCTTTTGATCCTTTCATTTCACTCCCTCATCACCACATCTTCCCAACTCATGAAGATTACAACCATTTTCCCTCCTCAAAACGCCAAAAGCTCTGCTGGGAGGAAGAACAACATGAGCTTACAACACCAACAATAGATGAGTTTGGTAATTGTTACTCTTTTCAATCTGAAGAGACACAACAGAAGCAGCAATTATTTTGCATGGATGCTCAGTGTGAGGAGAATGGTAAGGAAAGAACCATATCTCCACAAAGCGTTGCCGCAAGAGAAAGAAGAAGAAAGATCACGAATAAGACTCAAGAGCTTGGTAGGTTGGTTCCTGGTGGAACAAAAATGAACACAGCTGATATGCTTAATGCAGCTGCAAAGTATGTTAAGTTCCTTCAAGCCCAAGTTGGAATGCTTGAACTCATGAACTCACTCGAGCAAGAAGATGAAGATGAAGCTGCACCTCCTTCTGAAATTCTACATGCTTTGGTTGTTTCTCCCTTTGTTCAAGAGAAGTTGTATGTGGGAGAAAAGTGCTTTTTGCCAAAAGAAACTGTCACCACTTTGACAAATCTTGAAGATATTCAATCAATACCTACCATGCTTGAGGAACTTCAACAGCACATTGGAATAGACCTTAATAAACCAAAACAAGAATAA 858 0.4009 MALSKFFNWNTLQLSDSETSTFNEAMPEEVAPNIQHLFPYSDESLFLSNTLFENYIDPNAAFIYPSEIQSPFDPFISLPHHHIFPTHEDYNHFPSSKRQKLCWEEEQHELTTPTIDEFGNCYSFQSEETQQKQQLFCMDAQCEENGKERTISPQSVAARERRRKITNKTQELGRLVPGGTKMNTADMLNAAAKYVKFLQAQVGMLELMNSLEQEDEDEAAPPSEILHALVVSPFVQEKLYVGEKCFLPKETVTTLTNLEDIQSIPTMLEELQQHIGIDLNKPKQE* 286
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu1g0064 285 SMART finulus 155 204 IPR011598 GO:0046983
Pvu1g0064 285 Gene3D - 147 219 IPR036638 GO:0046983
Pvu1g0064 285 Pfam Helix-loop-helix DNA-binding domain 159 199 IPR011598 GO:0046983
Pvu1g0064 285 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 1 269 - -
Pvu1g0064 285 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 147 209 IPR036638 GO:0046983
Pvu1g0064 285 PANTHER TRANSCRIPTION FACTOR BHLH52-RELATED 1 269 - -
Pvu1g0064 285 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 149 198 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu1g0064 Pvu-Chr1 522216 523489 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu1g0064 2 279 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G34820 33.110 3.73e-26 102
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Pvu1g0064 HLH 2.4e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu1g0064 - - pvu:PHAVU_001G006100g 583.178