Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu1g0054 ATGGATTGCTTCTGCATACACATTGCTCTCATCTGGGTTTTCATTTTCAAAGGTGCTTCAGGTGCAACATTTACTCTTATAAACAAATGTGATTACACAGTGTGGCCTGGGATTTTGGCCAATGCAGGGAGCTCCGGATTGGATTCAACCGGGTTTCAACTCCAACCGGGTGGGTCAAGGATCTTCCACGCGCCGCCGAATTGGTCGGGAAGATTCTGGGGAAGAACCGGGTGCAATTTTGACCCGAATACCCAACAGGGTAGTTGCACAACCGGAGACTGTGGCTCCAATCAGGTAGAATGCAACGGGGGCGGGGCAAGCCCACCCGCCACATTGGCGGAGTTCACGGTCGGGTCGGGTTCGGGCACGCAGGACTTTTACGATGTGAGTCTCGTTGACGGTTACAACTTGCCGTTAATTGTGGAGCCCAGTGGCGGATCAGGTACGTGCGGGTCTACCGGGTGCGCTGCGGACCTGAACCAACGGTGCCCCAACGAGTTACGCGTGGCGGATCGCGCCGCGTGTAGGAGCGCCTGCGAGGCGTTTCGGAGCCCCGAGTATTGCTGCAGCGGCGCGTACGGTTCACCCGCGACATGCAAGCCTTCGATTTATTCGCAGGTATTCAAATCCGCGTGTCCGAAATCGTATAGCTACGCATACGACGACGCTACGAGTACGTTTACGTGTACGGGAGCTGATTATACCATTACATTCTGCCCTTCAACCACAAGCCAAAAATCTGCAAGGGATTCACCACCTCCTCCAACTGGAATTGGGTCAGAAACAGGGACAGGGGAGATGCCATTGATAGTTAACAGTCCATGGTTTCCCAACTTTTTCACTGGACTCTCATCCAACTCTCATTCGTGTCCCTTGCCATTCATTGTTACACTCACTGTGCTAATCTTCTTCTCTTTGCAATACTCATAG 930 0.529 MDCFCIHIALIWVFIFKGASGATFTLINKCDYTVWPGILANAGSSGLDSTGFQLQPGGSRIFHAPPNWSGRFWGRTGCNFDPNTQQGSCTTGDCGSNQVECNGGGASPPATLAEFTVGSGSGTQDFYDVSLVDGYNLPLIVEPSGGSGTCGSTGCAADLNQRCPNELRVADRAACRSACEAFRSPEYCCSGAYGSPATCKPSIYSQVFKSACPKSYSYAYDDATSTFTCTGADYTITFCPSTTSQKSARDSPPPPTGIGSETGTGEMPLIVNSPWFPNFFTGLSSNSHSCPLPFIVTLTVLIFFSLQYS* 310
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu1g0054 309 PANTHER THAUMATIN-LIKE PROTEIN 1 14 253 - -
Pvu1g0054 309 Gene3D Thaumatin 22 240 IPR037176 -
Pvu1g0054 309 SUPERFAMILY Osmotin, thaumatin-like protein 22 241 IPR037176 -
Pvu1g0054 309 MobiDBLite consensus disorder prediction 242 263 - -
Pvu1g0054 309 Pfam Thaumatin family 28 240 IPR001938 -
Pvu1g0054 309 ProSiteProfiles Thaumatin family profile. 21 240 IPR001938 -
Pvu1g0054 309 PANTHER OS03G0233200 PROTEIN 14 253 IPR001938 -
Pvu1g0054 309 PRINTS Pathogenesis-related protein signature 23 35 IPR001938 -
Pvu1g0054 309 PRINTS Pathogenesis-related protein signature 71 82 IPR001938 -
Pvu1g0054 309 PRINTS Pathogenesis-related protein signature 125 141 IPR001938 -
Pvu1g0054 309 PRINTS Pathogenesis-related protein signature 230 239 IPR001938 -
Pvu1g0054 309 SMART tha2 24 240 IPR001938 -
Pvu1g0054 309 CDD TLP-PA 23 239 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu1g0054 Pvu-Chr1 458580 460919 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu1g0054 6 271 Receptor kinase-like Gene Family AT5G38280 46.014 3.97e-77 246
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu1g0054 - - gmx:100786772 582.022