Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu1g0044 ATGGTTACCACTGCCAAATCTTCCAACCACCACTCCTCCTCTACTCCTCCCTCCCCCCTCCACCCTTCCGATCCCAACTTCCCGCCAAAAAACCTTCCCTCGCCCTGGGCTCAAGTCGTTCGCGGTGGCGACCCCGAATCGCCGCCTGCTATTCACCAATCGCCGCCCTCGACGTCATCCTCCTCCTCGTCACTCATTGCCGACCACCCCCCGTCCTCCGACTGTTCTCCCAAGGTCATTCCGGCGTCGCCGCCGCTCGACAATTCTAACACGGTTGGTGTTGCAGATAGCTCTGATGGCGCTGAGGACAATGCTGATCGTTCTAAGAAACCCGTTTGGAATAAGCCCTCAAACGGCGTCGTCGTGGAGACTGGGCCTGTAATGGGCGCTGAATCGTGGCCCGCTCTGTCTGCTGCATCTACCAAAGCTTCTGTTAAATTGCCAGCTGAATCGTCGTCCAAGACCGTTGCTGATGGATCACTCTCCACTTCTCAGGGGCCAGTGAATTCACAGTCTCCTCAGAAACAAGCTACTACTACTAATGCAAAACCTAATTCTGCAACAAATTATAATGTGCCTGGCAGACAAAGATCGATGAAGCGGGTAGGTGGTAGTGGCATTGTGTCTGGTCCTTCCCAGGGCAACTTCTCCAATCCTCCTCCACCACCGCCACCACCACCACCTTTTCCTGTTTACCATATCCCACCAGTTAGCTATGGTATGGTACCGTTTGTACCTGAGCCTGCTCCAAGAGATCATTACCGGAACAGTAACTGGGATCATAGACCAATGATGGGGGCTTTTGTGCCTGGGATGAATGAATATCGTGGTTCCTCTCACAGGGGTTATTTTGGGCCTCATCCACGAGGAGATGGTTCCTCTTCCTATCGTAATACTTACGGTAGCAGGCATGATCAAGATCGCCGAAATTACGGGAATACCAGAGACACTTTTGTACCTCAACCAAGGATGCCTCCTAGAGGATTACTGAGGCACCCACCTCCTAACTCTGCTGCTTTTGTGGGCCATCAACCCATTGGACCATTTGCTAACCCCATGGGTTTTTCTGAGTTTTATTACTATCAGCCAGTAACAATGGAACAGTTTACGGGTATGCCTTACTTCACGCCCAGCCCTCCTCCTACAATCTTTCCTGCTGCTGAATCTCCTCTCTCCAATAAGATAGTCCGCCAAATTGAATATTACTTTAGTGACGCTAATTTAGTGAGGGATGAGTTTTTAAGGTCTAAAATGGATGAACAGGGTTGGGTTCCTGTTACTTTGATTGCAGACTTCCCTCGGGTTAGAAGTCTTACAACCAACGTTCAGATGATCTTGGATTCTATGAGAACTTCCACAATAGTGGAAGTGCTGGGTGACAAGTTGAGAAGACATAATGAGTGGATGAAATGGGTGTCCTCTACTAAAACACGGTCTGGATCTACTTCTACTTCATCTTCTCCCCGTGGCCCAAGATACAATAACTTGACAGCTAATTTTCAAGCTATAACCCTGGAAGAAACAACAGTCCTGTAG 1536 0.4954 MVTTAKSSNHHSSSTPPSPLHPSDPNFPPKNLPSPWAQVVRGGDPESPPAIHQSPPSTSSSSSSLIADHPPSSDCSPKVIPASPPLDNSNTVGVADSSDGAEDNADRSKKPVWNKPSNGVVVETGPVMGAESWPALSAASTKASVKLPAESSSKTVADGSLSTSQGPVNSQSPQKQATTTNAKPNSATNYNVPGRQRSMKRVGGSGIVSGPSQGNFSNPPPPPPPPPPFPVYHIPPVSYGMVPFVPEPAPRDHYRNSNWDHRPMMGAFVPGMNEYRGSSHRGYFGPHPRGDGSSSYRNTYGSRHDQDRRNYGNTRDTFVPQPRMPPRGLLRHPPPNSAAFVGHQPIGPFANPMGFSEFYYYQPVTMEQFTGMPYFTPSPPPTIFPAAESPLSNKIVRQIEYYFSDANLVRDEFLRSKMDEQGWVPVTLIADFPRVRSLTTNVQMILDSMRTSTIVEVLGDKLRRHNEWMKWVSSTKTRSGSTSTSSSPRGPRYNNLTANFQAITLEETTVL* 512
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu1g0044 511 CDD LAM 393 464 - -
Pvu1g0044 511 PANTHER LUPUS LA PROTEIN-RELATED 35 509 IPR045180 -
Pvu1g0044 511 Pfam La domain 395 450 IPR006630 -
Pvu1g0044 511 MobiDBLite consensus disorder prediction 474 493 - -
Pvu1g0044 511 MobiDBLite consensus disorder prediction 144 195 - -
Pvu1g0044 511 MobiDBLite consensus disorder prediction 53 70 - -
Pvu1g0044 511 MobiDBLite consensus disorder prediction 1 228 - -
Pvu1g0044 511 MobiDBLite consensus disorder prediction 83 97 - -
Pvu1g0044 511 MobiDBLite consensus disorder prediction 279 327 - -
Pvu1g0044 511 PANTHER LA-RELATED PROTEIN 1B 35 509 - -
Pvu1g0044 511 MobiDBLite consensus disorder prediction 1 17 - -
Pvu1g0044 511 Gene3D - 385 475 IPR036388 -
Pvu1g0044 511 MobiDBLite consensus disorder prediction 18 32 - -
Pvu1g0044 511 SMART la 389 465 IPR006630 -
Pvu1g0044 511 ProSiteProfiles La-type HTH domain profile. 385 474 IPR006630 -
Pvu1g0044 511 SUPERFAMILY "Winged helix" DNA-binding domain 383 473 IPR036390 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu1g0044 Pvu-Chr1 362952 367289 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu1g0044 K18757 - gmx:100785504 699.893
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu1g0044 1 362952 367289 Pvu1g0044 1 362952 367289 ECH
Pvu1g0044 1 362952 367289 Pvu9g0194 9 3478589 3480559 PCT