Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu1g0036 ATGGGGTTGGGGTTGTTTAAGGCGTCGAGCAGCGAGGCCCGTGAAGTAGAAATCATGGAGTCATGGGAGTCCTCGCCGGAGCATAGCTCGGAAGAAGATGGTGGAAAAAGGAAAGCAGTTGCAGTTGCAGTTGCAGGTGGTGGTGAGAAAGAGACGAGCTCGCCAGAGACGACGGGAGGTATTCTGGGAAAACCGTACGTGAAGATAGAGGAAATTTACGAGATGAAGAAAGAGCTGGGAAGTGGGCAATGGGGTGTGACATATCTGTGCGTGGAGAAGACGACGCAGAGAGAGTACGCGTGCAAGTCCATTGCGAAGTCGAAGCTTTTGAGTGAAAATGAGATTGAGGACGTGAGAAGAGAGGTTATGATTCTGCAGCATCTTTCGGGGCAACCCAACATTGTGGAGTTAAGAGGGGCTTACGAGGACAGAGAGGAAGTGCACCTGGTGATGGAGCTGTGCAGTGGCGGCGAACTCTTCGACCGCATCATTGCCAAAGGGCACTACTCCGAGCGTGAGGCGGCAACGGTGGCGAGGCAGATCGTGAACGCCGTTCACGTCTGCCATTCCATGGGCGTCATGCATCGAGACCTCAGGCCAGAGAACTTCTTGTTGGCCACCAACACAGACGATGCTCCGGTCAAAACCACCGATTTTGGACTCTCCGTTTTCATCGAGGAAGGTAAAGTGTATAAGGAGATTGTTGGAAGTGCATACTACGTGGCCCCAGAGGTGTTAAAGAGGAGTTATGGAAAAGAAATAGATGTGTGGAGTGCAGGAATCATTTTATACATCCTTCTAAGTGGAGTGCCTCCATTTTGGGCTGAAACCCAGAGAGGCATATTTGATTCAATTTTGGAAGGCAAACTTGATCTGGAGAGTGCACCATGGCCTTCTATTTCAGCTGCTGCAAAGGATTTGATCAGGAAAATGTTGACCCGTGACCCTAAGAAACGCATTACAGCTGCTGAAGCACTTGAACACCCTTGGATGAAGGAGGGTGGTGAAGCATCTGACAAGCCTATAGACAATGATGTTTTGAGTAGGATGAAACAGTTCACAGCAATGAACAAGAAGAAGAAACTTGCTTTCAAGCCACAAGGACGACAACGAAAACAACGAAAAAGACTACCTTCTCAGTGA 1143 0.4926 MGLGLFKASSSEAREVEIMESWESSPEHSSEEDGGKRKAVAVAVAGGGEKETSSPETTGGILGKPYVKIEEIYEMKKELGSGQWGVTYLCVEKTTQREYACKSIAKSKLLSENEIEDVRREVMILQHLSGQPNIVELRGAYEDREEVHLVMELCSGGELFDRIIAKGHYSEREAATVARQIVNAVHVCHSMGVMHRDLRPENFLLATNTDDAPVKTTDFGLSVFIEEGKVYKEIVGSAYYVAPEVLKRSYGKEIDVWSAGIILYILLSGVPPFWAETQRGIFDSILEGKLDLESAPWPSISAAAKDLIRKMLTRDPKKRITAAEALEHPWMKEGGEASDKPIDNDVLSRMKQFTAMNKKKKLAFKPQGRQRKQRKRLPSQ* 381
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu1g0036 380 ProSitePatterns Protein kinases ATP-binding region signature. 79 106 IPR017441 GO:0005524
Pvu1g0036 380 MobiDBLite consensus disorder prediction 17 38 - -
Pvu1g0036 380 SMART tyrkin_6 73 331 IPR020635 GO:0004713|GO:0006468
Pvu1g0036 380 Pfam Protein kinase domain 73 331 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pvu1g0036 380 MobiDBLite consensus disorder prediction 354 380 - -
Pvu1g0036 380 Gene3D Phosphorylase Kinase; domain 1 75 159 - -
Pvu1g0036 380 PANTHER SERINE/THREONINE-PROTEIN KINASE 50 365 - -
Pvu1g0036 380 PANTHER CALCIUM-DEPENDENT PROTEIN KINASE 29 50 365 - -
Pvu1g0036 380 Gene3D Transferase(Phosphotransferase) domain 1 160 374 - -
Pvu1g0036 380 ProSitePatterns Tyrosine protein kinases specific active-site signature. 193 205 IPR008266 GO:0004672|GO:0006468
Pvu1g0036 380 CDD STKc_CAMK 73 330 - -
Pvu1g0036 380 ProSiteProfiles Protein kinase domain profile. 73 331 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pvu1g0036 380 MobiDBLite consensus disorder prediction 17 60 - -
Pvu1g0036 380 SUPERFAMILY Protein kinase-like (PK-like) 73 337 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu1g0036 Pvu-Chr1 316748 318829 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu1g0036 59 365 EF-hand Containing Proteins AT1G50700 72.638 4.94e-173 489
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CDPK Pvu1g0036 Pkinase 4e-76 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu1g0036 K13412 - gmx:100816157 554.288