Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu1g0022 ATGGGTTTCTTGAAGGAACAAACCAATCAACAAACTGATCCAGCTGCACTTTTACGTGATGGAAAAGAAATACTTCTTCAGGGATTCAACTGGGAGTCTCACAAACACAACTGGTGGAATACCTTAGAAACCAAAGTTCCTGAGATTGCTAAATCTGGATTTACATCGGTGTGGTTGCCACCACCAACTCACTCGTTTTCACCTGAAGGTTACACTCCGCAGAACCTTTACTCTCTTAACAGCAAATATGGTTCTGAGCGTCAGCTAAGAGCTTTGCTTCAGAAGATGAAGCAGCATAAAGTCAGAGCAATGGCAGACATAGTTATCAATCATCGTACTGGGACCACTAAAGGACGTGGAGGGATATATAATCGTTTTGATGGAATTCCATTAGGGTGGGATGAACGTGCAGTGACATCATGTACTGGAGGAATGGGTAATCGAAGCACAGGAGCTGTTTTCGATGGATTTCCTAACATTGACCACACTCAAGACTTTGTGAGAAAGGATATCATTGGCTGGCTCCGTTGGTTGCGCCATGATGTGGGCTTTCAAGATTTTCGGTTTGATTTTGCAAAGGGGTTTTCAGCAAAATATGTGAGAGAATATATTGAGGGAGCTAAGCCTTTGTTCTCTGTCGGGGAGTACTGGGATACTTGCAACTATAAGGGCTCTTCTTTGGACTATAATCAAGATGGTCATAGACAACGTATAGTGAATTGGATAGATGGCACTGGACAACTTTCAACTGCATTTGACTTCACAACAAAAGGGATTCTTCAGGAAGCTGTGAGAGGAGAGCTTTGGCGCCTGCGTGATGCTCAAGGAAAGCCCCCAGGTGTGGTTGGCTGGTGGTCATCAAGAGCTGTCACATTTATTGATAATCATGACACAGGCTCAACCCAGGGTCATTGGCCATTCCCCAAAGACCATATTATGGAGGGGTATGCATATATACTGACTCATCCCGGAATACCAACAGTTTTCTATGACCACTTCTATGACTGGGGCAATTCAATTCGGGATCAGATTGTGAAATTGATTGATGTTCGCAAGCGTCATGGTATTCAAAGTAGATCAGGTGTGAGGATTGTGGAGGCCAGACATGATCTCTATTCTGCAATAATTGGAGAAAAAGTGTGCATGAAAATTGGAAATGGTTCATGGTGTCCCTCTGGGAGGGAATGGACATTGGCAACTTCAGGCCACAATTATGCAGTGTGGCAAAAGTGA 1233 0.4388 MGFLKEQTNQQTDPAALLRDGKEILLQGFNWESHKHNWWNTLETKVPEIAKSGFTSVWLPPPTHSFSPEGYTPQNLYSLNSKYGSERQLRALLQKMKQHKVRAMADIVINHRTGTTKGRGGIYNRFDGIPLGWDERAVTSCTGGMGNRSTGAVFDGFPNIDHTQDFVRKDIIGWLRWLRHDVGFQDFRFDFAKGFSAKYVREYIEGAKPLFSVGEYWDTCNYKGSSLDYNQDGHRQRIVNWIDGTGQLSTAFDFTTKGILQEAVRGELWRLRDAQGKPPGVVGWWSSRAVTFIDNHDTGSTQGHWPFPKDHIMEGYAYILTHPGIPTVFYDHFYDWGNSIRDQIVKLIDVRKRHGIQSRSGVRIVEARHDLYSAIIGEKVCMKIGNGSWCPSGREWTLATSGHNYAVWQK* 411
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu1g0022 410 SMART alpha-amyl_c2 352 410 IPR012850 GO:0004556|GO:0005509|GO:0005975
Pvu1g0022 410 Pfam Alpha-amylase C-terminal beta-sheet domain 353 409 IPR012850 GO:0004556|GO:0005509|GO:0005975
Pvu1g0022 410 SUPERFAMILY Glycosyl hydrolase domain 356 410 - -
Pvu1g0022 410 CDD AmyAc_arch_bac_plant_AmyA 24 362 - -
Pvu1g0022 410 PANTHER ALPHA-AMYLASE 2-RELATED 19 410 - -
Pvu1g0022 410 Gene3D Glycosidases 23 355 - -
Pvu1g0022 410 SMART aamy 23 363 IPR006047 GO:0005975
Pvu1g0022 410 SUPERFAMILY (Trans)glycosidases 29 341 IPR017853 -
Pvu1g0022 410 PRINTS Alpha-amylase signature 100 111 IPR006046 GO:0004556|GO:0005975|GO:0043169
Pvu1g0022 410 PRINTS Alpha-amylase signature 184 195 IPR006046 GO:0004556|GO:0005975|GO:0043169
Pvu1g0022 410 PRINTS Alpha-amylase signature 287 299 IPR006046 GO:0004556|GO:0005975|GO:0043169
Pvu1g0022 410 Gene3D - 356 410 IPR013780 -
Pvu1g0022 410 PANTHER ALPHA-AMYLASE 19 410 - -
Pvu1g0022 410 PIRSF Alpha-amylase_plant 6 410 IPR013775 GO:0004556|GO:0005509|GO:0005975
Pvu1g0022 410 Pfam Alpha amylase, catalytic domain 45 112 IPR006047 GO:0005975
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu1g0022 Pvu-Chr1 263637 267409 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu1g0022 6 410 Glycoside Hydrolase AT1G76130 74.568 0.0 665
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu1g0022 K01176 - gmx:100813490 781.171
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu1g0022 1 263637 267409 Pvu1g0022 1 263637 267409 ECH