Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu1g0011 ATGAGCTGCTTTTGTTCTGGGACTCGGGGGAAGGATGTGGGCATTGAGAGTTTAGGGTCAAACTCAAAGACAAAGCCGAAGAAAGCGTCTGCAACGAGTTACAGTTTTCGCGAGCTTGCAACGGCGGCGAGGGGTTTTAAGGAAGAGAACTTGATCGGGGAAGGAGGTTTCGGAAAGGTCTACAAGGCTCGTATCTCAACAAGCCAACTTGTTGCCATAAAACAGTTACGTCTAGATGGTGAAAGTCATCAGGGTAATAGGGAATTTGTGACGGAGGTTCTTATGTTGAGCCTCCTTCACCATTCAAATCTAGTTAAATTGTTTGGCTACTGCACCCATGGGGATCAGAGGCTTTTGGTTTATGAATACATGGCCATGGGAAGCCTGGAACAGTATCTCTCACAGAAAAACCCACTGGGTTGGAGGAATCGACTGAAGATTGGAGTGGGGGCTGCAAGGGGGCTCCAGTATCTACACTGTGTAGCGAATCCTCCTGTTATCTATCGGGACTTGAAATCAGCCAACATCTTGTTAGACAACAATTTGCACCCTAAACTCTCTGACTTTGGGCTGGCAAAGCTAGGACCTGTCGGAGACAATACCCATGTTTCCACCAGAGTCATGGGAACATATGGGTACTGTGCCCCCGAGTATGCCATGAGTGGAAAACTAACTCTTAAATCTGATATATACTGCTTTGGTGTCGTCTTGCTCGAGTTGATCACCGGACGCAAGGCAATGGATGTCACTAGAAAACAACGGGAGCAAAGCTTGGTTGCATGGGCTCGGCCATATTTGAGCGACCGGAGAAAGGTTTCGCAGATTGTTGACCCTCTTTTGGAAGGAAGGTACCCCTTACGTTGTTTGCAGAATGCAGTTGCTATCACTGCAATGTGCCTCCAGGAGCAACCCAATCTTCGTCCTTCCATAACTGACATTGTTGTTGCATTGGAGTACCTCGCCTCTGAAAGCTCTGAAGTCGTCAGGCACCGTGCTCGCACCCCACCACGCCAATCACACTCACACTCCGACACCCAATCCGACTCAACTAACTAG 1056 0.4858 MSCFCSGTRGKDVGIESLGSNSKTKPKKASATSYSFRELATAARGFKEENLIGEGGFGKVYKARISTSQLVAIKQLRLDGESHQGNREFVTEVLMLSLLHHSNLVKLFGYCTHGDQRLLVYEYMAMGSLEQYLSQKNPLGWRNRLKIGVGAARGLQYLHCVANPPVIYRDLKSANILLDNNLHPKLSDFGLAKLGPVGDNTHVSTRVMGTYGYCAPEYAMSGKLTLKSDIYCFGVVLLELITGRKAMDVTRKQREQSLVAWARPYLSDRRKVSQIVDPLLEGRYPLRCLQNAVAITAMCLQEQPNLRPSITDIVVALEYLASESSEVVRHRARTPPRQSHSHSDTQSDSTN* 352
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu1g0011 351 MobiDBLite consensus disorder prediction 327 351 - -
Pvu1g0011 351 Pfam Protein kinase domain 46 314 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pvu1g0011 351 PIRSF ILK 9 334 - -
Pvu1g0011 351 Gene3D Transferase(Phosphotransferase) domain 1 124 341 - -
Pvu1g0011 351 ProSitePatterns Serine/Threonine protein kinases active-site signature. 166 178 IPR008271 GO:0004672|GO:0006468
Pvu1g0011 351 PANTHER OS07G0668900 PROTEIN 21 345 - -
Pvu1g0011 351 SUPERFAMILY Protein kinase-like (PK-like) 26 318 IPR011009 -
Pvu1g0011 351 CDD STKc_IRAK 52 318 - -
Pvu1g0011 351 ProSiteProfiles Protein kinase domain profile. 46 320 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pvu1g0011 351 ProSitePatterns Protein kinases ATP-binding region signature. 52 74 IPR017441 GO:0005524
Pvu1g0011 351 SMART serkin_6 46 320 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pvu1g0011 351 PANTHER OS07G0668900 PROTEIN 21 345 - -
Pvu1g0011 351 Gene3D Phosphorylase Kinase; domain 1 14 123 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu1g0011 Pvu-Chr1 179027 180468 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu1g0011 30 343 Glycoside Hydrolase AT3G07070 58.255 1.43e-130 378
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-1 Pvu1g0011 Pkinase 8.1e-50 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu1g0011 - - gmx:100794722 542.732