Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu11g2250 ATGGCGAGCGTAAGCTCCCTGTGTGTTCCGTGGCGAGTTGATGTCCATGGAGGCAGAAATTCAGAACTCCGCAAAAGCATCCAAAGGCTTGACCTGACGGTGGAGCAGGACGAGGTTGTTAGCCGTCAAAAACTGATAAACTCCTCCCTTCTCCTCAAAGCCTGCATCAGGTCTGGTAATTTGGAGCTTGGCAAACTCCTTCACCACAAGCTCATTCACTCTCAACTCTCCCTCGACTCTGTTCTTCTCAACTCCCTCATTAGCCTCTACTCCAAATCTGGCGACTGCCAAAACGCGCTTTCCATATTCCAAGGCATGGGCGCTAAGCGAGACTTGGTCTCGCGCTTCTTACCTTTCTTCGCATGCTCCAATGCGGGATTTATCCCAACGAATATTGCTTCACGGCTTCGATTCGCTCTTGTTCTAATGCTCGATATGTTTGCGAAAGGCGGTGGTGATATCCACTCTGCACGCATGGTGTTTGACAAAATGCGAGACAGAAATCTAGTTACTTGGACTTTGATGATTACTAGGTTTGCTCAACTTGGTTTGCTGAGCGATGCTGTTGATTTATTCTGCAGTATGTTGTTATGTGGCCACACACCTGATGGGTTTACTCTGACTAGTCTCTTGTCGGGCAGCGTGGATATGGGGTGGTTCTCACTTGGGAAACAATTTCATTCTTGGGTTATCCGCTCTGGGCTGGCTTCAGATGTCTGTGTGGGTTGCACTCTGGTGGATTTGTATGCAAAATGTGCAGCTGTTGGATCGGTGGAAAATTCTAGGAAAGTGTTTGATAGCATGCCACTTCATAATGTTATGTCTTGGACTGCTCTCATTTCTGGTTATGTACAGGGCAGAAAAGAGCAGGAAGCCATGAAATTGTTTTGTAACATGCTTCATGGTCGTGTTGCACCAAATTGCTTCACATTCTCCAGCGTGCTCAAGGCTTGTGCAACTCTTCCTGATTTTAGCTTCGGCAAAGAACTTCATGGCCAGACAATTAAACTGGGCCTTTCCGCAATTAACTGTGTGGGGAACTCTCTTATTAACATGTATGCAAGGTCTGGAAGAACGGATTGTGCTCGAAAAGCTTTCGATATCTTGTTTGAAAAGAATTTAATTTCGCACAGTACTGATATTGATGCAAATGCAAAAGAATTGGATTCTGAAGAATCTTTTAACCATGATACTGAGCACACTGCTATTGGAGCTAGTTCTTTTACATATGCATGCCTCTTAAGCGGCGCAGCTTGTTTAGGTACAATCGGTAAGGGTGAACAAATCCATGCCCTCGTAGTGAAGTCAGGATTTGGAACCGATTTATGCATTAATAATGCTTTGATCTCTATGTATTCCAAGTGCGGAAACAAAGAAGCTGCTTTGCAGGTCTTTAATGACATGGGGCATCGCAATGTAATAACTTGGACCTCTATCATAAGTGCTTTGGCAAAACATGGATTTGCTACAGAAGCTTTAGAATTGTTCCATGAAATGCTTGAAATAGGTGCAAAGCCTAATGAGGTCACTTATATTGCGGTTTTATCAGCCTGTAGTCACGTTGGTTTGATTGATGAGGCATGGAAACACTTCAACTCTATGCATTATGATCATGGTATCAGTCCAAGGATGGATCATTATGCATGTATGGTTGATTTGCTTGGTCGATCTGGATTGCTTTTAGAAGCCGTTGAATTTATTCGTTCAATGCCTTTTGATGCTGATGCACTGGTATGGCGTACATTTCTTGGTTCTTGTCGGGTTCATCGTAACACCAAGCTTGGGGAGCATGCTGCAAAAATGATTCTTGAGCGGGAACCTCATGATCCAGCTACCTATATACTATTGTCAAACTTATATGCGTCAGAAGGGAGGTGGGATGATGTAGCAGCCATAAGAAAATGCATGAAACAGAAAAAAATGATGAAAGAAACAGGTTATAGCTGGATTGAAGTCAACAACCAGATGCACAAATTCCACGTAGGGGATACTTCACATCCCCAGGCTAAAAAGATATATGATGAACTTGATGAATTGGCTTTAAAAATAAAGAACTTGGGTTATGTCCCAAATACAGATTTTGTTCTTCACGATGTGGAGGATGAACAGAAGGATCACTATCTGTTTCAACACAGTGAAAAAATTGCAGTGGCATTTGCTCTTATAAGTACCCCGAAACCAAAACCTATTAGAGTATTTAAAAATCTCCGAGTTTGTGGGGACTGCCATACGGCAATGAAGTACATATCAATAGTTAGTGGAAGAGAGATAGTGGTCAGAGATGCATACCGGTTTCATCATATGAAGGATGGGAAATGCTCTTGCAATGATTATTGGTAA 2340 0.4286 MASVSSLCVPWRVDVHGGRNSELRKSIQRLDLTVEQDEVVSRQKLINSSLLLKACIRSGNLELGKLLHHKLIHSQLSLDSVLLNSLISLYSKSGDCQNALSIFQGMGAKRDLVSRFLPFFACSNAGFIPTNIASRLRFALVLMLDMFAKGGGDIHSARMVFDKMRDRNLVTWTLMITRFAQLGLLSDAVDLFCSMLLCGHTPDGFTLTSLLSGSVDMGWFSLGKQFHSWVIRSGLASDVCVGCTLVDLYAKCAAVGSVENSRKVFDSMPLHNVMSWTALISGYVQGRKEQEAMKLFCNMLHGRVAPNCFTFSSVLKACATLPDFSFGKELHGQTIKLGLSAINCVGNSLINMYARSGRTDCARKAFDILFEKNLISHSTDIDANAKELDSEESFNHDTEHTAIGASSFTYACLLSGAACLGTIGKGEQIHALVVKSGFGTDLCINNALISMYSKCGNKEAALQVFNDMGHRNVITWTSIISALAKHGFATEALELFHEMLEIGAKPNEVTYIAVLSACSHVGLIDEAWKHFNSMHYDHGISPRMDHYACMVDLLGRSGLLLEAVEFIRSMPFDADALVWRTFLGSCRVHRNTKLGEHAAKMILEREPHDPATYILLSNLYASEGRWDDVAAIRKCMKQKKMMKETGYSWIEVNNQMHKFHVGDTSHPQAKKIYDELDELALKIKNLGYVPNTDFVLHDVEDEQKDHYLFQHSEKIAVAFALISTPKPKPIRVFKNLRVCGDCHTAMKYISIVSGREIVVRDAYRFHHMKDGKCSCNDYW* 780
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu11g2250 779 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 138 311 - -
Pvu11g2250 779 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 180 381 - -
Pvu11g2250 779 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 298 772 - -
Pvu11g2250 779 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 51 109 - -
Pvu11g2250 779 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 168 202 IPR002885 -
Pvu11g2250 779 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 507 542 IPR002885 -
Pvu11g2250 779 Pfam PPR repeat family 471 519 IPR002885 -
Pvu11g2250 779 Pfam PPR repeat family 272 319 IPR002885 -
Pvu11g2250 779 Pfam PPR repeat family 168 213 IPR002885 -
Pvu11g2250 779 Pfam E+ motif 657 680 IPR046849 -
Pvu11g2250 779 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 272 306 IPR002885 -
Pvu11g2250 779 Gene3D Tetratricopeptide repeat domain 136 219 IPR011990 GO:0005515
Pvu11g2250 779 Gene3D Tetratricopeptide repeat domain 18 122 IPR011990 GO:0005515
Pvu11g2250 779 Pfam DYW family of nucleic acid deaminases 687 779 IPR032867 GO:0008270
Pvu11g2250 779 Gene3D Tetratricopeptide repeat domain 449 674 IPR011990 GO:0005515
Pvu11g2250 779 Gene3D Tetratricopeptide repeat domain 220 393 IPR011990 GO:0005515
Pvu11g2250 779 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 472 506 IPR002885 -
Pvu11g2250 779 Pfam PPR repeat 547 570 IPR002885 -
Pvu11g2250 779 Pfam PPR repeat 83 106 IPR002885 -
Pvu11g2250 779 Pfam PPR repeat 347 372 IPR002885 -
Pvu11g2250 779 Pfam E motif 589 651 IPR046848 -
Pvu11g2250 779 PANTHER - 51 109 - -
Pvu11g2250 779 PANTHER - 180 381 - -
Pvu11g2250 779 PANTHER - 138 311 - -
Pvu11g2250 779 PANTHER - 298 772 - -
Pvu11g2250 779 TIGRFAM PPR: pentatricopeptide repeat domain 275 308 IPR002885 -
Pvu11g2250 779 TIGRFAM PPR: pentatricopeptide repeat domain 170 203 IPR002885 -
Pvu11g2250 779 TIGRFAM PPR: pentatricopeptide repeat domain 474 507 IPR002885 -
Pvu11g2250 779 TIGRFAM PPR: pentatricopeptide repeat domain 446 470 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu11g2250 Pvu-Chr11 50206940 50209605 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu11g2250 22 779 Glycoside Hydrolase AT3G49170 51.652 0.0 804
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu11g2250 - - pvu:PHAVU_011G216500g 1309.66