Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu11g2232 ATGGGGTGCAGGAAGAAGCAACCTAGTTTTGGGTCGTTTGAGGAAGAGCCCAATAGTCCAAAAGCCTTGTTTTGGGATCCGAAGCCCTGTTGTTTAGGGTTGAATGTGGCATTGCGGCGCCTTGAGAGGTTATATATAGTGAAGAGTATTCGCAAAAACCCTAATTCACCATTTCTTCTCTATCTCTCTATCGTTGTAGAGCTGCTGTTCAATTTGCAAACGATGTCGCATCGGAAGTTCGAGCACCCTAGGCACGGTTCCCTCGGCTTTCTCCCAAGGAAGCGAGCTTCTCGTCATCGTGGAAAGGTGAAGTCTTTCCCAAAAGACAATCCCAGCCAACCATGCAGGCTGACTGCCTTTGTGGGCTACAAGGCTGGAATGACCCACATTGTTAGAGAGGTTGAGAAACCTGGATCAAAACTTCATAAGAAGGAGACATGTGAAGCTGTCACAATCATTGAAACTCCTCCGTTGGTAGTTGTGGGAGTGGTGGGGTATGTGAAGACCCCACGCGGCCTGCGCACACTCAATACTGTTTGGGCCCAGCATCTGAGTGAAGAAATCAAGAGACGATTTTACAAGAATTGGTGCAAATCCAAAAAGAAGGCTTTTACCAAATATACAAAGAAGTATGAAACAGAGGAAGGAAAGAAAGATATTGAAACTCAGCTTGAGAAATTGAAGAAGTATTCTACTGTCATTCGTGTTCTGGCTCATACCCAGATAAGGAAGTTGAAGGGTCTGAAACAGAAGAAAGCACATTTGATGGAGATCCAAGTTAATGGTGGAACAATAGCACAAAAGGTGGACTACGCATACAGCTTCTTTGAGAAGCAAATCCCAGTGGATGCTGTTTTTCAAAAAGATGAGATGATTGATGTGATTGGTGTGACTAAGGGTAAGGGTTACGAAGGTGTTGTGACTCGTTGGGGAGTTACTCGTCTCCCTCGCAAGACTCACAGAGGTCTGAGGAAGGTTGCTTGCATAGGTGCCTGGCACCCTGCTCGTGTTTCATTCACTGTTGCCAGGGCAGGTCAGAATGGTTACCATCATCGAACTGAGCTGAACAAAAAGATCTACAAAGTTGCCAAAACTGGTGAAGAGTCACATTCTGCCATCACTGAATTTGACAGGACTGAGAAGGATATTACTCCAATGGGTGGATTCCCACACTATGGTGTTGTGAAGGATGATTACATTATGGTGAAGGGATGCTGTGTTGGTCCCAAGAAAAGGGTTGTCACTCTTCGTCAGTCCCTTCTCAAACAGACATCTCGTGTGGCACTTGAAGAGATCAAACTCAAGTTCATAGACACCTCATCCAAGTTTGGACATGGCCGATTCCAGACCACCCAGGAGAAACAAAAGTTTTATGGTCGATTGAAAGCATGA 1392 0.454 MGCRKKQPSFGSFEEEPNSPKALFWDPKPCCLGLNVALRRLERLYIVKSIRKNPNSPFLLYLSIVVELLFNLQTMSHRKFEHPRHGSLGFLPRKRASRHRGKVKSFPKDNPSQPCRLTAFVGYKAGMTHIVREVEKPGSKLHKKETCEAVTIIETPPLVVVGVVGYVKTPRGLRTLNTVWAQHLSEEIKRRFYKNWCKSKKKAFTKYTKKYETEEGKKDIETQLEKLKKYSTVIRVLAHTQIRKLKGLKQKKAHLMEIQVNGGTIAQKVDYAYSFFEKQIPVDAVFQKDEMIDVIGVTKGKGYEGVVTRWGVTRLPRKTHRGLRKVACIGAWHPARVSFTVARAGQNGYHHRTELNKKIYKVAKTGEESHSAITEFDRTEKDITPMGGFPHYGVVKDDYIMVKGCCVGPKKRVVTLRQSLLKQTSRVALEEIKLKFIDTSSKFGHGRFQTTQEKQKFYGRLKA* 464
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu11g2232 463 Gene3D Ribosomal protein L3, domain 3 75 348 IPR044892 -
Pvu11g2232 463 SUPERFAMILY Translation proteins 78 444 IPR009000 -
Pvu11g2232 463 Pfam Ribosomal protein L3 75 444 IPR000597 GO:0003735|GO:0005840|GO:0006412
Pvu11g2232 463 Gene3D - 157 281 - -
Pvu11g2232 463 ProSitePatterns Ribosomal protein L3 signature. 286 309 IPR019926 -
Pvu11g2232 463 PANTHER 60S RIBOSOMAL PROTEIN L3-LIKE 75 463 - -
Pvu11g2232 463 PANTHER 60S RIBOSOMAL PROTEIN L3-RELATED 75 463 IPR045077 GO:0003735|GO:0005840|GO:0006412
Pvu11g2232 463 Gene3D Translation factors 118 459 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu11g2232 Pvu-Chr11 49970825 49974037 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu11g2232 75 460 Cytoplasmic Ribosomal Protein Gene Family AT1G61580 86.010 0.0 697
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu11g2232 K02925 - gmx:100792174 741.495