Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu11g2229 ATGGCTTCTTTAACTTTTCTTCATTCCTATTTTCTTCTGCTAATTATTCTTCTTCTTCTCTCATCTTTGTTCAGTGCTACATCTTCAAACTGTGGTGATTCTAGCATGCACTTAAACTTCTCTCTAAAAAGCAATGATTCAGTTCCATGGAATTCACCTTCTGGCCATTTCGCCTTTGGTTTTCAAACAGTTCTATACGACAACAATGAGTTCATGTCTGTGCTTGCAGTTTGGTTTGCCAAGGACCCGAATGAAACCATGGTGTGGTATGCAAAACCAAGAAACAAATTTCATCTTTTTCCATATGGGTCAACAATGAATCTCACAGACAAAGGAATTGTGGTGTATGATCCAAAGGGTCATGAAGTGTTGTGGCACCGTCCAGAAAACAACACTGTTTCTTTGGTATCGTGTGCTTCTGTGCTAGACGATGGAAGTTTTGTGCTTGTGGATGAGAGTGGGAAGAAGGTTTGGGAGAGCTTTGAGGAGCCAACAGATACTATTTTGCCTGGTCAGAATTTGTCTAGGCCTAGAGCATTCAGAGCACGCCAATCTGAGACGAGTTTTGATGATGGGAGTTTTCAACTCAGTTGGCAGATGGATGGCAATTTGGTTCTTTACTTTCTTCCAAAATCAAGCACAGATGATGATGATGAAATACAAGAGGCTTACTGGTCCCCTGGAACTCACAATACTGGATCACAGCTTTTCTTCGATGAGTCTGGACACATGTACATAAAGAATGACACAGGCTCAGTGATCATCACATATGGTGGATCTGATGAGTTCTTTTACATGGCTAGAATTGACCCTGATGGGGTTTTCAGACTCTATCGGCACCCAAAAGGTGATCACACAGCTGTTGCTAATAGCTGCAGTTCGAGGTGGTGGAGTGTGGAGGAAAAGCATCCAGAAGATATTTGCCTTTCCTTCATGAAGCAAACTGGGAATGTTATCTGCGGTTTTAACAGCTACTGTGTTACCATCGAGGACAAGACTAATTGTGAGTGCCCAGATCATTATTCTCCTTTCGAACATGACAAACTCACAGGTTGTAGACCAGATTTTCCACTGCCTAGTTGCAACAAAGAAGGGTGGGAGCAGAATAAGGATCTTGTAGATTTCAGAGAGTATAGGAATTTGGATTGGCCTCTCTCAGATTATGACAGGTTGCTTGGAATAGGAATGAACAAGGATACATGTAGACAAAAGTGCCTTGAAGATTGCTTTTGTGCTGTGGCCATATATGGTGAGGAAAGCGATGGGGGAAGCTGTTGGAAGAAGAAGTATCCTTTGAGCAATGGAAGAATGCACCATAATGTGACTAGAATAGCTCTTATGAAGGTGCCTAAAACAGATTTAAACAATGGTGGAAAAGAACAGAATACACTTGTGCTTGTTGTATCAATACTCCTTGGAAGTTCAGTGTTGATTAATGTTTTTCTACTTGTTGCTTTGTTTGCTGCTTTTTTCATTTTCTACCACAAGAGGCTTTTGAATGGTCCAAACTTGTCAGTTGGAACAGTGAGCCACTTCACATACAAGGAGCTTGAAGAAGCAACCACAGGGTTCAAACAAATGTTGGGTCGAGGTGCTTTTGGAACAGTTTACAAAGGGGTGTTGGCATCAAACACAAGCAGGTATGTTGCTGTGAAGAGGCTAGACAAGGTTGTGCAAGAAGGTGAGAAAGAGTTCAAAACAGAAGTGAGTGTGATTGGACAAACCCACCATAGAAACTTGGTTCGCCTGTTTGGTTATTGTGATGAAGGGGAGCATCGTCTACTGGTGTATGAGTACATGAGCAATGGTTCATTGGCTGGTTTTCTCTTTGGGATCTCAAGGCCTCATTGGAACCAAAGAGTGCAAATTTCTTTGGGGATTGCAAGAGGGCTCACATATTTGCATGAAGAGTGCAGCACTCAGATAATTCATTGTGACATAAAGCCTCAAAACATACTCCTAGACGACTTGTTCACTCCTAGGATTGCTGATTTTGGGTTGGCAAAGTTGTTGTTGGCTGAGCAAACCAAAGTTGCTAGAACTGGTTTGAGAGGGACAATTGGTTACTTTGCACCTGAATGGTTTAGAAAAGCTTCAATCACAACCAAAGTAGATGTTTACAGCTTTGGAGTGGTGCTGTTGGAGATCTTGTGTTGCAAGTCAAGTGTTGCCTTTGCACTTGAAAGTGAAGAAGAGGCACTCATAGATTGGGCTTATCATTGTTATAGCCATGGAAAGGTGGCTAAATTGGTGGAAAATGATGAGGAAGCAAAGAGTGATATAAAGAGGGTGGAGAATCATGTGATGGTAGCAATTTGGTGCATTCAAGAGGATCCCTCACTCAGACCCTCCATGAAAAAGATTACACAAATGCTTGAGGGTGTTACAACAGTTTCTGTGCCACCTTGCCCTTCTTTCTTCACTTCATCACCCTTCTAA 2439 0.4203 MASLTFLHSYFLLLIILLLLSSLFSATSSNCGDSSMHLNFSLKSNDSVPWNSPSGHFAFGFQTVLYDNNEFMSVLAVWFAKDPNETMVWYAKPRNKFHLFPYGSTMNLTDKGIVVYDPKGHEVLWHRPENNTVSLVSCASVLDDGSFVLVDESGKKVWESFEEPTDTILPGQNLSRPRAFRARQSETSFDDGSFQLSWQMDGNLVLYFLPKSSTDDDDEIQEAYWSPGTHNTGSQLFFDESGHMYIKNDTGSVIITYGGSDEFFYMARIDPDGVFRLYRHPKGDHTAVANSCSSRWWSVEEKHPEDICLSFMKQTGNVICGFNSYCVTIEDKTNCECPDHYSPFEHDKLTGCRPDFPLPSCNKEGWEQNKDLVDFREYRNLDWPLSDYDRLLGIGMNKDTCRQKCLEDCFCAVAIYGEESDGGSCWKKKYPLSNGRMHHNVTRIALMKVPKTDLNNGGKEQNTLVLVVSILLGSSVLINVFLLVALFAAFFIFYHKRLLNGPNLSVGTVSHFTYKELEEATTGFKQMLGRGAFGTVYKGVLASNTSRYVAVKRLDKVVQEGEKEFKTEVSVIGQTHHRNLVRLFGYCDEGEHRLLVYEYMSNGSLAGFLFGISRPHWNQRVQISLGIARGLTYLHEECSTQIIHCDIKPQNILLDDLFTPRIADFGLAKLLLAEQTKVARTGLRGTIGYFAPEWFRKASITTKVDVYSFGVVLLEILCCKSSVAFALESEEEALIDWAYHCYSHGKVAKLVENDEEAKSDIKRVENHVMVAIWCIQEDPSLRPSMKKITQMLEGVTTVSVPPCPSFFTSSPF* 813
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu11g2229 812 SUPERFAMILY Protein kinase-like (PK-like) 505 793 IPR011009 -
Pvu11g2229 812 Gene3D Phosphorylase Kinase; domain 1 495 599 - -
Pvu11g2229 812 Gene3D Transferase(Phosphotransferase) domain 1 600 800 - -
Pvu11g2229 812 SMART blect_4 41 164 IPR001480 -
Pvu11g2229 812 SUPERFAMILY alpha-D-mannose-specific plant lectins 186 281 IPR036426 -
Pvu11g2229 812 ProSiteProfiles Protein kinase domain profile. 522 807 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pvu11g2229 812 CDD STKc_IRAK 528 794 - -
Pvu11g2229 812 SMART serkin_6 522 792 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pvu11g2229 812 PANTHER G-TYPE LECTIN S-RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD2-5 2 810 - -
Pvu11g2229 812 SUPERFAMILY alpha-D-mannose-specific plant lectins 74 229 IPR036426 -
Pvu11g2229 812 PIRSF SRK 4 811 IPR024171 GO:0004674
Pvu11g2229 812 Gene3D - 165 293 IPR036426 -
Pvu11g2229 812 ProSitePatterns Serine/Threonine protein kinases active-site signature. 642 654 IPR008271 GO:0004672|GO:0006468
Pvu11g2229 812 Pfam D-mannose binding lectin 86 184 IPR001480 -
Pvu11g2229 812 Pfam Protein kinase domain 525 790 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pvu11g2229 812 PANTHER - 2 810 - -
Pvu11g2229 812 Gene3D - 30 162 IPR036426 -
Pvu11g2229 812 Coils Coil 747 767 - -
Pvu11g2229 812 CDD PAN_AP_plant 367 450 - -
Pvu11g2229 812 ProSitePatterns Protein kinases ATP-binding region signature. 528 552 IPR017441 GO:0005524
Pvu11g2229 812 ProSiteProfiles Bulb-type lectin domain profile. 33 162 IPR001480 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu11g2229 Pvu-Chr11 49950270 49953795 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu11g2229 466 796 Receptor kinase-like Gene Family AT5G45780 39.130 4.29e-70 239
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_SD-2b Pvu11g2229 Pkinase 1.3e-49 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu11g2229 - - vra:106753716 1305.81