Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu11g2164 ATGTCAAATTCCTCTCTGACCATTCTTTTACTGTGTCTTTGTTACGTCTCTTTCTCAGAGGCTCTCAATGGTGGTTTCACTGTGGAGATCATCCACCGTGACTCACCAAAATCACCACTCTATCGTCCCACACAAACTCAATTCCAACGGTTTTCCAATGCTGTTCGAAGCTCCATTCATCGTGCTAACCGTTTCAACAAAACTTCCGTCTCTCCAAACACAGTTGAGTCCAATGTAACCCTAGACATAGGTGACTATACCATGAGCTATTCAGTTGGAACCCCAGAGTTCCAAGTTTTTGGCATTGTTGACACAGGCAGTGACATAATTTGGCTACAGTGTCAACCTTGTAAAATTTGTTACGACCAAACCACTCCAGTTTTCAATTCTTCAAACTCCAAGACCTACAAAACCCTACCTTGTTCTTCTAGTTCATGCAAATCAGTGTTTAACACTTGTTCTTCTCCTCAAGAGAAAACTTGTGAATATAGTATTAGGTATGAGGATGGTACACACTCAGAAGGAGATCTTAGTTTGGAGACACTCACTTTAGGCTCCACTAATGGCTCTTCTGTGCAATTTCCTGCAACTGTGATAGGGTGTGGACGTAATAATAGTTTTTCCTCTGAAAAAAGTTCTGGCATAGTTGGTTTGGGAAGTGGACCTGTGTCTCTAATATCTCAATTGAGTTCTTCAATAGGTGGAAGGTTTTCCTATTGTTTTCCAATGATAAATGACAAACCTAGCAAACTCAGTTTTGGAGATGCTGCTGTGGTTTCTGGGAGTGGCACTGTTTCCACCCCAATAGGTTATCATGATCAAGAGACACATTATTACCTAACATTGGAAGCACTGAGTGTTGGAAACAACAGAATAGAGTTTAGAAACTTTTCATCTGGGTCTAATGGAGAGGGAAATATCATAATTGACTCAGGTACAACACTCACTCTTTTGCCAGGTTATGTTTACACAAAGTTGGCATCAGCAGTGGCAAAGGAAATTAAATTAGATCGTGTTGAGGATGCATTTAATCAGTTGAGCCTTTGCTATAAAGGTAAATTAGATGAAGTACATGCACCAGTGATAACAGCACATTTTAGAGGTGATGCAGATGTGAAGTTGAATGTTGAGAACTCCTTTATTGATGGGGGTGATGGGGTAGTTTGCTTTGCTTTCGTGGCAAGTGAGAGTTTTTCCATCTTAGGAAACATGGCTCAGAGAAACCTCTTGGTTGGGTATGACCTGCAGAAGAAAACAGTCTCCTTTAAGCCCACAGATTGTACTAAACAGTGA 1293 0.4076 MSNSSLTILLLCLCYVSFSEALNGGFTVEIIHRDSPKSPLYRPTQTQFQRFSNAVRSSIHRANRFNKTSVSPNTVESNVTLDIGDYTMSYSVGTPEFQVFGIVDTGSDIIWLQCQPCKICYDQTTPVFNSSNSKTYKTLPCSSSSCKSVFNTCSSPQEKTCEYSIRYEDGTHSEGDLSLETLTLGSTNGSSVQFPATVIGCGRNNSFSSEKSSGIVGLGSGPVSLISQLSSSIGGRFSYCFPMINDKPSKLSFGDAAVVSGSGTVSTPIGYHDQETHYYLTLEALSVGNNRIEFRNFSSGSNGEGNIIIDSGTTLTLLPGYVYTKLASAVAKEIKLDRVEDAFNQLSLCYKGKLDEVHAPVITAHFRGDADVKLNVENSFIDGGDGVVCFAFVASESFSILGNMAQRNLLVGYDLQKKTVSFKPTDCTKQ* 431
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu11g2164 430 PANTHER OS07G0603500 PROTEIN-RELATED 5 428 - -
Pvu11g2164 430 Pfam Xylanase inhibitor C-terminal 277 423 IPR032799 -
Pvu11g2164 430 PRINTS Pepsin (A1) aspartic protease family signature 92 112 IPR001461 GO:0004190|GO:0006508
Pvu11g2164 430 PRINTS Pepsin (A1) aspartic protease family signature 307 318 IPR001461 GO:0004190|GO:0006508
Pvu11g2164 430 PRINTS Pepsin (A1) aspartic protease family signature 399 414 IPR001461 GO:0004190|GO:0006508
Pvu11g2164 430 SUPERFAMILY Acid proteases 82 427 IPR021109 -
Pvu11g2164 430 Gene3D Acid Proteases 254 430 IPR021109 -
Pvu11g2164 430 Gene3D Acid Proteases 61 253 IPR021109 -
Pvu11g2164 430 CDD pepsin_A_like_plant 86 427 IPR034161 -
Pvu11g2164 430 ProSitePatterns Eukaryotic and viral aspartyl proteases active site. 307 318 IPR001969 GO:0004190|GO:0006508
Pvu11g2164 430 ProSiteProfiles Peptidase family A1 domain profile. 86 423 IPR033121 -
Pvu11g2164 430 Pfam Xylanase inhibitor N-terminal 86 255 IPR032861 -
Pvu11g2164 430 PANTHER ASPARTIC PROTEINASE CDR1-RELATED 5 428 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu11g2164 Pvu-Chr11 49022018 49023310 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu11g2164 83 429 Miscellaneous Gene Families AT1G44130 27.346 8.91e-27 109
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu11g2164 - - var:108339078 573.933