Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu11g2163 ATGGCATCAAGTACTTTATTCTTCGATGATATTCGAAGCAAAGTTGATGTTGATCCTCCTCAAAATGAAGAGTCAACAGATGTTGGTGAATTAGTAAATGATCCTGCACAAACTGCACTTAAACCTAATGGTACCGTTTCAAGCAGTGTGCGTGAGCTATTAGAGTGCCCTGTATGCTTGAATGCCATGTACCCTCCAATCCATCAGTGTTCAAATGGTCACACAATATGCTCTGGTTGCAAACCCAGGGTCCATAACAGGTGCCCTACTTGTAGGCATGAGCTTGGCAATATCAGATGCCTTGCACTGGAGAAAGTGGCTGCATCTTTGGAACTTCCGTGTAAATATCAAGGATTCGGGTGCATTGGAATATATCCCTATTATAGCAAGCTAAAGCATGAATCACAATGTGCATATAGACCTTACAACTGTCCATATGCTGGTTCAGAATGCTCTATTATGGGTGATATACCCTACCTGGTGGCTCATCTGAAAGACGACCACAAAGTGGACATGCACAATGGTAGCACTTTCAACCATCGCTATGTCAAATCAAATCCACATGAAGTTGAAAATGCCACATGGATGTTAACGGTCTTCAGCTGCTTTGGTCAGTATTTTTGTCTACATTTTGAAGCTTTTCAGCTTGGAATGGCTCCTGTCTACATAGCCTTTTTGCGGTTTATGGGTGATGATAATGAAGCAAAAAATTATAGCTACAGTTTAGAGGTAGGTGGAAATGGGAGGAAGATGATTTGGCAGGGTGTGCCTAGAAGCATCCGGGACAGCCACCGGAAGGTTCGTGACAGTTTTGATGGTCTCATCATCCAGAGAAATATGGCCCTTTTCTTTTCCGGCGGCGACCGGAAGGAATTGAAGCTAAGGGTTACTGGTAGGATTTGGAAAGAACAATGA 915 0.4317 MASSTLFFDDIRSKVDVDPPQNEESTDVGELVNDPAQTALKPNGTVSSSVRELLECPVCLNAMYPPIHQCSNGHTICSGCKPRVHNRCPTCRHELGNIRCLALEKVAASLELPCKYQGFGCIGIYPYYSKLKHESQCAYRPYNCPYAGSECSIMGDIPYLVAHLKDDHKVDMHNGSTFNHRYVKSNPHEVENATWMLTVFSCFGQYFCLHFEAFQLGMAPVYIAFLRFMGDDNEAKNYSYSLEVGGNGRKMIWQGVPRSIRDSHRKVRDSFDGLIIQRNMALFFSGGDRKELKLRVTGRIWKEQ* 305
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu11g2163 304 CDD RING-HC_SIAHs 54 92 - -
Pvu11g2163 304 PANTHER E3 UBIQUITIN-PROTEIN LIGASE DIS1 5 304 - -
Pvu11g2163 304 PANTHER E3 UBIQUITIN PROTEIN LIGASE SIAH 5 304 - -
Pvu11g2163 304 ProSiteProfiles Zinc finger RING-type profile. 56 92 IPR001841 -
Pvu11g2163 304 SUPERFAMILY RING/U-box 48 96 - -
Pvu11g2163 304 Gene3D Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A 165 297 IPR008974 GO:0005515
Pvu11g2163 304 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 12 108 IPR013083 -
Pvu11g2163 304 ProSiteProfiles Zinc finger SIAH-type profile. 109 169 IPR013010 GO:0008270
Pvu11g2163 304 Pfam Seven in absentia protein family 98 297 IPR018121 GO:0005737|GO:0006511|GO:0007275
Pvu11g2163 304 SUPERFAMILY TRAF domain-like 109 301 - -
Pvu11g2163 304 CDD Sina 170 298 - -
Pvu11g2163 304 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 109 164 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu11g2163 Pvu-Chr11 48881098 48886147 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu11g2163 47 304 C3H Transcription Factor Family AT2G41980 79.457 2.09e-161 450
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu11g2163 K04506 - gmx:100793457 639.417
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu11g2163 11 48881098 48886147 Pvu11g2163 11 48881098 48886147 ECH
Pvu5g0307 5 2721438 2725601 Pvu11g2163 11 48881098 48886147 PCT