Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu11g2148 ATGAACATGTTAGGCCTTAGAGACTTAGTTTTCATAGCTCCAACTGCTTCTCAACTTCACCACCATCAACACCAACACCAACACCAACACCACCACCCCATTTCAGCAGAACACCATCCCAACCTTCCCCTGCCTTCTCCAGCATCTCTCAGTGTTGGCCTTGGCATTTTTCCTCTCCTAACAGTTCCACACACCAATGATGTTCATGATCAGGCTCAAGACTGTGCCAACAACACCACCACCAACCACAACACCAACTATTGGAACCTCAAGATGTGTGGTGTCTCAGAAGTGAATTCCACAAGAAAAGGTGTTGAAGATGAGGGGAGGAGTAACAAGCATGTGATGGAGACTGAGGAAAGTGGTGAGTTTAGGGTGTGTCAGGATTGTGGCAATAGGGCCAAGAGGGATTGCAGCTATAAAAGGTGCAGAACTTGTTGCAAAGGTCGTGGCTTTGATTGCAACACTCACGTGAAGAGCACATGGGTCCCAGCCTCTCTGAGACGCAGTGGTGGTAATAGTGGTAGTGATGCTAACGGTGATGGAGATGGAGATGGTGATGGTGGTGCTTCTAAGAGGCTAAGAACAATAGGGTCATCCAAGAATGCTGCAGCTACTTCTCTTAGTTCCACTTCCAATGCTACCCCATCAAAGAGCTTTAGCTTAGACACCAGCTCTTGTCAACAAGATGCTGGATTCAAGCAATCTTTGCCACGGCATGTGCGTGCACCTGCTGTGTTCAGGTGCCATAGAGTGTCTGCTATTGGGAGTGGTGAAGATGAGATTGCATACTTGGCCACAGTGCATATCAGTGGCCATGTGTTCAAGGGGTTTCTGTATGATCATGGTGCTGATGCCAGAAATGATGTGCCTAGTATCTCTGAACTGCAACTGGGAAACAATGGAAGTGGAAAGAGTAATAATAATAGGGAATGTTCTTCTGCAATTGGGGTTCCAACCACTGCTTACCCTGCTTCTGTTTGCTGA 987 0.4732 MNMLGLRDLVFIAPTASQLHHHQHQHQHQHHHPISAEHHPNLPLPSPASLSVGLGIFPLLTVPHTNDVHDQAQDCANNTTTNHNTNYWNLKMCGVSEVNSTRKGVEDEGRSNKHVMETEESGEFRVCQDCGNRAKRDCSYKRCRTCCKGRGFDCNTHVKSTWVPASLRRSGGNSGSDANGDGDGDGDGGASKRLRTIGSSKNAAATSLSSTSNATPSKSFSLDTSSCQQDAGFKQSLPRHVRAPAVFRCHRVSAIGSGEDEIAYLATVHISGHVFKGFLYDHGADARNDVPSISELQLGNNGSGKSNNNRECSSAIGVPTTAYPASVC* 329
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu11g2148 328 TIGRFAM put_zinc_LRP1: putative zinc finger domain, LRP1 type 126 167 IPR006510 -
Pvu11g2148 328 MobiDBLite consensus disorder prediction 195 221 - -
Pvu11g2148 328 MobiDBLite consensus disorder prediction 17 46 - -
Pvu11g2148 328 MobiDBLite consensus disorder prediction 165 221 - -
Pvu11g2148 328 Pfam Domain of unknown function (DUF702) 126 285 - -
Pvu11g2148 328 PANTHER LRP1 CARBOXY-TERMINAL DOMAIN PROTEIN 2 328 - -
Pvu11g2148 328 PANTHER PROTEIN LATERAL ROOT PRIMORDIUM 1 2 328 IPR007818 GO:0003700|GO:0006355
Pvu11g2148 328 TIGRFAM LRP1_Cterm: LRP1 C-terminal domain 237 283 IPR006511 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu11g2148 Pvu-Chr11 48594151 48599427 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu11g2148 1 319 C2H2 Transcription Factor Family AT5G12330 39.577 7.64e-54 179
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SRS Pvu11g2148 DUF702 5.6e-53 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu11g2148 - - gmx:100777812 464.536