Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu11g2142 ATGAAGTTGGGAAGTTTTGTGACTATTATGAAGAGCATGTGTTATGTACATGTTGTCAATGCCTATCTGATCGAACCTGTTGCGACCATTGGTCCTAGTATGCTTCCTACAATCGATTTGACAGCAAGTTGGTTCTTAACTGAGAAGATATCAACCCGATGGGGTAAAGTTGATCGTGGAGATATTGTAATCTTGCGCGACCCTCAAAATCCTAGACTCATGCTGACCAAACGTGTGGTTGGATTGGAGGGTGATAGGATTACACACAAGCACAATAGTGAAACCAATAAATTGAAGGGTGGTGGTTTTACTTACATTTCCAAGCCTAAGACCCATGAATTGGAGAGTGATAGTTTAACATACAGTTCCAATCCCGAGACCAATGACTTGGTGGGTGATAATTCTTCACACATTTCCTATCCTGAGAACCTAAAGCCTGAGACGATTGTGGTTCCAAAGGGTAGCGTTTGGGTAGAGGGAGATTACAAGTTTAACAGCCGTGATTCTAGAAAATTTGGTCCCGTTCCTTATGACCTTATCCGTGGGAGGTTATTTTGGAGGATATATCCATTTAAATATTTTGGACCTTTCTGGAATAAATGA 603 0.4113 MKLGSFVTIMKSMCYVHVVNAYLIEPVATIGPSMLPTIDLTASWFLTEKISTRWGKVDRGDIVILRDPQNPRLMLTKRVVGLEGDRITHKHNSETNKLKGGGFTYISKPKTHELESDSLTYSSNPETNDLVGDNSSHISYPENLKPETIVVPKGSVWVEGDYKFNSRDSRKFGPVPYDLIRGRLFWRIYPFKYFGPFWNK* 201
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu11g2142 200 Pfam Signal peptidase, peptidase S26 7 187 IPR019533 GO:0004252|GO:0006465
Pvu11g2142 200 SUPERFAMILY LexA/Signal peptidase 22 198 IPR036286 -
Pvu11g2142 200 CDD S26_SPase_I 25 183 IPR019533 GO:0004252|GO:0006465
Pvu11g2142 200 PRINTS Bacterial leader peptidase 1 (S26A) family signature 22 38 IPR000223 GO:0006508|GO:0008236|GO:0016020
Pvu11g2142 200 PRINTS Bacterial leader peptidase 1 (S26A) family signature 75 87 IPR000223 GO:0006508|GO:0008236|GO:0016020
Pvu11g2142 200 PRINTS Bacterial leader peptidase 1 (S26A) family signature 151 170 IPR000223 GO:0006508|GO:0008236|GO:0016020
Pvu11g2142 200 PANTHER PROTEASE FAMILY S26 MITOCHONDRIAL INNER MEMBRANE PROTEASE-RELATED 114 199 - -
Pvu11g2142 200 PANTHER PROTEASE FAMILY S26 MITOCHONDRIAL INNER MEMBRANE PROTEASE-RELATED 6 94 - -
Pvu11g2142 200 PANTHER PEPTIDASE S24/S26A/S26B/S26C FAMILY PROTEIN 6 94 - -
Pvu11g2142 200 PANTHER PEPTIDASE S24/S26A/S26B/S26C FAMILY PROTEIN 114 199 - -
Pvu11g2142 200 Gene3D Umud Fragment, subunit A 18 199 - -
Pvu11g2142 200 TIGRFAM sigpep_I_bact: signal peptidase I 8 191 IPR000223 GO:0006508|GO:0008236|GO:0016020
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu11g2142 Pvu-Chr11 48491659 48494162 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu11g2142 34 197 MADS-box Gene Family AT1G29960 38.415 1.23e-30 107
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu11g2142 K09647 - gmx:100526949 211.846