Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu11g2116 ATGGCTGCTTCGGTTGTAGGGAACGCGACCACGAACACGAGCGCGGGTGTGGAGTGGCACGTGCGTCCTCCAAACCCTAAGAACCCAATCGTCTTCTTCGATGTCACCATCGGCAACATACCTGCTGGTCGAATCAAGATGGAACTCTTCGCCGACATTGCGCCCAAAACCGCCGAGAATTTCAGGCAGTTCTGCACTGGGGAGTACAGAAAAGCTGGACTTCCAGTTGGTTACAAGGGTTGTCAATTTCATAGAGTGATTAAGGATTTTATGATTCAGGCTGGCGATTTTGTAAAGGGTGATGGTAGTGGATGTGTTTCAATCTATGGACTTAAGCTTGATGATGAAAACTTTACTGCCAAACACACTGGCCCCGGCCTTCTGTCGATGGCAAATAGTGGACCAAATACCAATGGTTGTCAGTTTTTTATAACATGCGCAAAATGCGACTGGCTTGACAACAAGCATGTCGTTTTTGGGAGAGTGCTTGGAGATGGCCTTTTGGTTGTGAGGAAGATTGAGAACGTGGCAACCGGACCCAATAACCGGCCAAAACTAGCTTGTGTCATTGCAGAATGTGGTGAAATGTAA 591 0.4772 MAASVVGNATTNTSAGVEWHVRPPNPKNPIVFFDVTIGNIPAGRIKMELFADIAPKTAENFRQFCTGEYRKAGLPVGYKGCQFHRVIKDFMIQAGDFVKGDGSGCVSIYGLKLDDENFTAKHTGPGLLSMANSGPNTNGCQFFITCAKCDWLDNKHVVFGRVLGDGLLVVRKIENVATGPNNRPKLACVIAECGEM* 197
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu11g2116 196 ProSitePatterns Cyclophilin-type peptidyl-prolyl cis-trans isomerase signature. 78 95 IPR020892 GO:0003755|GO:0006457
Pvu11g2116 196 Gene3D - 18 196 IPR029000 -
Pvu11g2116 196 ProSiteProfiles Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain profile. 32 195 IPR002130 GO:0000413|GO:0003755
Pvu11g2116 196 CDD cyclophilin_ABH_like 29 194 - -
Pvu11g2116 196 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 49 64 IPR002130 GO:0000413|GO:0003755
Pvu11g2116 196 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 83 95 IPR002130 GO:0000413|GO:0003755
Pvu11g2116 196 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 126 141 IPR002130 GO:0000413|GO:0003755
Pvu11g2116 196 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 141 153 IPR002130 GO:0000413|GO:0003755
Pvu11g2116 196 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 154 169 IPR002130 GO:0000413|GO:0003755
Pvu11g2116 196 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE 25 196 - -
Pvu11g2116 196 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE H 25 196 - -
Pvu11g2116 196 PIRSF Peptidylpro_ismrse 8 196 IPR024936 GO:0003755
Pvu11g2116 196 Pfam Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD 33 194 IPR002130 GO:0000413|GO:0003755
Pvu11g2116 196 SUPERFAMILY Cyclophilin-like 19 196 IPR029000 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu11g2116 Pvu-Chr11 48157669 48161754 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu11g2116 25 193 U-box Gene Family AT5G67530 42.105 1.05e-28 110
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu11g2116 K09567 - gmx:100813835 387.497
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu11g2116 11 48157669 48161754 Pvu11g2116 11 48157669 48161754 ECH