Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu11g2104 ATGACTACTTCAAAATGGTTGCATGTTTGTCCGAAAGGAATTCATGATCTGTTGCTGTATATCAAAACAAAGTATAACAACCCTTTGATCAACATCACTGAAAATGGTATAGATGAATTCAATGATCACACTCTATCACTTGAAGAAGCCTTAGCAGATACTTCAAGAATTGATTACTTTTATGATCACCTCTATTATCTTCAAAGTGCAATCGAGAATGGCGTGAATGTGAAAGGATATTTTGCATGGTCTTTAACTGACAGCTTCGAATGGAATTTAGGGTACATTTCAAGGTTTGGAACAATCTTTGTAGATTACCATAACCTCAAAAGATATCCAAAGTTATCTGCCATTTGGTCCTTTTTACTCACCTTTGAGGCTGCAAAATCAAAAGGGAATCTACCCACTTGCATATCAACCCTTACAGCTGCTCCAAGCCACATGTCATATAAAATACTGGACGGAAGTAATGGAGATGTTAGCATTGATCAATACCATCGTTATAAGGAAGATGTTGAAAACATTAAGGAAATGAACATGGATGCTTTCAGATTTTCAATCTCTTGGTCCAGAATACTTCCAAAAGGAAAGGTTAGCGGAGGTGTGAACAAGGAAGGAATCAACTATTACAACAACCTCATTAATGAACTGTTAGATAAAGGTCTTAAACCCTTTGCGACCCTTTTTCATTGGGACCTTCCTCAAGCCTTAGAAGACGAATATGATGGTTTTTTAAGTCCTAATATAGTGGATGATTTTAAAGATTATGCAGAACTTTGTTTTAAAGAATTTGGAGACAGGGTAAAACATTGGACTACATTAAATGAACCATGGACCTTTAGTACATATGGGTATGCTGAGGCTGCTTTCCCACCTGGAAGATGTTCAACCTGGCAAAACTTATCTTGTACTGCTGGTGATTCAGCCACTGAACCCTACATAGTGACTCACAATCAATTACTTGCTCATGCAGCTGCTGTCAATGTCTATAAGACAAAATATCAGGTGTCTCAAAAGGGTGTGATAGGGATATCGCTGGCATGTCATTGGATAGTACCACTCTATGATACAGAGTTGGATCAGTTTGCTGCAGAAAGAGCCCTTGATTTTTTAATCGGATGGTTTATGGAGCCAATGACAATTGGAGAATACCCTAAATCCATGCAATCTCTGGTAGGGAGTCGATTACCAAAGTTTTCTGCTGATGAGATCAAACTTGTAAGAGGGTCCTTTGATTTTATTGGAATAAACTACTATACTTCTTATTATGCTTCTGATACACCTGAGTTAAGTGAAGCAAGGCCTAGCGCCCTCACAGATTCTCTTGTTATTCTTACAAAAAAGGAAAGTTGTATTCTGCAGAGTACTTCAAAATGGTTCTATGTTTGTCCAAAAGGAATTCATGATCTGTTGCTGTATATGAAAACAAAGTACAACAACCCTTTGCTCTACATCACTGAAAATGGTATAGATGAAATCATTGATGAAACTCTATCACTTGAAGAAGCCTTAGCAGATACTTCAAGAGTTGATTACTTTCATGATCATCTCTATTATCTTCAAATTGCAATCGAGAATGGCGCGAATGTGAAAGGATATTTTGCATGGTCTTTAACTGACAACTTCGGATGGAGTTTAGGGTCCATTACAAGGTTTGGAACAATCTTTGTAGATTACCATAATCTCAAAAGATATCCAAAGTTATCTGCCATTTGGTTTAGAGATTTCCTACAAGGCAAAATAGATACATATGACCATTAA 1761 0.3702 MTTSKWLHVCPKGIHDLLLYIKTKYNNPLINITENGIDEFNDHTLSLEEALADTSRIDYFYDHLYYLQSAIENGVNVKGYFAWSLTDSFEWNLGYISRFGTIFVDYHNLKRYPKLSAIWSFLLTFEAAKSKGNLPTCISTLTAAPSHMSYKILDGSNGDVSIDQYHRYKEDVENIKEMNMDAFRFSISWSRILPKGKVSGGVNKEGINYYNNLINELLDKGLKPFATLFHWDLPQALEDEYDGFLSPNIVDDFKDYAELCFKEFGDRVKHWTTLNEPWTFSTYGYAEAAFPPGRCSTWQNLSCTAGDSATEPYIVTHNQLLAHAAAVNVYKTKYQVSQKGVIGISLACHWIVPLYDTELDQFAAERALDFLIGWFMEPMTIGEYPKSMQSLVGSRLPKFSADEIKLVRGSFDFIGINYYTSYYASDTPELSEARPSALTDSLVILTKKESCILQSTSKWFYVCPKGIHDLLLYMKTKYNNPLLYITENGIDEIIDETLSLEEALADTSRVDYFHDHLYYLQIAIENGANVKGYFAWSLTDNFGWSLGSITRFGTIFVDYHNLKRYPKLSAIWFRDFLQGKIDTYDH* 587
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu11g2104 586 SUPERFAMILY (Trans)glycosidases 2 119 IPR017853 -
Pvu11g2104 586 PANTHER GLYCOSIDE HYDROLASE FAMILY 1 PROTEIN 2 120 - -
Pvu11g2104 586 PANTHER GLYCOSIDE HYDROLASE FAMILY 1 PROTEIN 147 582 - -
Pvu11g2104 586 PANTHER GLYCOSYL HYDROLASE 2 120 IPR001360 GO:0004553|GO:0005975
Pvu11g2104 586 PANTHER GLYCOSYL HYDROLASE 147 582 IPR001360 GO:0004553|GO:0005975
Pvu11g2104 586 Pfam Glycosyl hydrolase family 1 147 578 IPR001360 GO:0004553|GO:0005975
Pvu11g2104 586 Pfam Glycosyl hydrolase family 1 2 119 IPR001360 GO:0004553|GO:0005975
Pvu11g2104 586 PRINTS Glycosyl hydrolase family 1 signature 410 424 IPR001360 GO:0004553|GO:0005975
Pvu11g2104 586 PRINTS Glycosyl hydrolase family 1 signature 483 491 IPR001360 GO:0004553|GO:0005975
Pvu11g2104 586 PRINTS Glycosyl hydrolase family 1 signature 506 517 IPR001360 GO:0004553|GO:0005975
Pvu11g2104 586 PRINTS Glycosyl hydrolase family 1 signature 527 544 IPR001360 GO:0004553|GO:0005975
Pvu11g2104 586 PRINTS Glycosyl hydrolase family 1 signature 551 563 IPR001360 GO:0004553|GO:0005975
Pvu11g2104 586 Gene3D Glycosidases 124 584 - -
Pvu11g2104 586 Gene3D Glycosidases 1 123 - -
Pvu11g2104 586 SUPERFAMILY (Trans)glycosidases 146 578 IPR017853 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu11g2104 Pvu-Chr11 48012047 48018560 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu11g2104 127 580 Glycoside Hydrolase AT5G44640 50.763 1.07e-162 472
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu11g2104 - K01188 pvu:PHAVU_011G202000g 1210.67