Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu11g2054 ATGACAGCAGAAATGGTTACCGGTGCTCTTGTTTCTATTCTCGTCGAGAGAACTATCGACACTTTGGCTTCCCGTTTTGTCCACATATTCGGTGCAAGAAAACACAAAAAGAAGCAACTCAGCCACCTGAAGATGAATCTCCTAGCCATTGATGTTGTGGCTTTTGATGCAGAGCAAAAACAGTTCACAGATCCACGTGTGAGAGATTGGCTTCTCAGGGCCAAAGATGTTGTGTTTGATGCAGAAGATCTCTTGGATGAAATAGATTATGAACTCTCCAAAAGCCAAGTGGAAGCTGAGTCTCAGAGTGCTACTAACAAGGTGTGGAATTCCCTCAAATCTCCTTTTGTCACTTTCTTTGAAAATGAAATTGAATCCAGGATGGAACAAGTCACTGAAGACCTAGAAGATCTTGCAACCCAAAGCAATGTTCTAGGTTTGAAAAAGGCTAGTGTTGTTGGGGTTGCACCAGGATCGAGTAGTAGATTAACATATACATCTTTGCCAAATGAAAGTGTTATTTATGGCAGAGATGAAGACAGAGAATTTGTCTTTAACTGGCTCACATCTGACACTCACAACAAACTTTCTATACTTTCAATTGTTGGCATGGGTGGGTTGGGTAAGACCTCACTCGCCCAACATGTATTCAATGACCCAAGGATTGATGGTAAATTTGATATTAAAGCTTGGGTTAGTATTCCACAGGAATTTGATGTTCTCAATGTATCAAGAGCAATTCTTGACACAATTACTGATTCAAATGATCATAGTATACAACAAGAAGTGGTTCAGAGAGGACTGAAAGAAAAATTGACGGGGAAGAAATTTCTTCTCATTTTGGATGACGTTTGGAACGAAAGACAGTCTAAATGGGAAGATGTGCAGAAACCCCTAATTTTCGGAGGCCAAGGCAGTAGGATTCTTGTCACTACACGTAGTGAGAAGGTTGCTGGTACCATGCGATCAGAAAAGTACCTCCTGCAGGTATTAAGGAAAGATGATTGCTGGGAATTGTTCGCAAAACATGCATTCCAAAGTGCTAATCCTCAACCACATCGAGACTTCATGGAGATTGGTAAGAAGATAGTTGAAAAATGTAATGGGCTTCCTTTAGCCTTGAAAACAATGGGAAGTCTATTACACAATAAATCATCCTTTTGGGAATGGGAAAGCATTATGAGAAGTGAGATATGGGATTTTTCAGAAAATGAAAGTGATATACTCCCTGCTTTAAGACTGAGTTATCTCTACCTTCCTTCTTATCTGAAGAAATGCTTTGCTTTTTGTGCCTTGTTTCCCAAAGGTTATGTGTTTGACAAGGAGTATTTAATTCAACTATGGTTGGCTGAAAATTTTCTAGAAAGCCCTCTACACAAAAGGAGTCCTAAAGAAGTTGGAGAACATTATTTCAATGATCTGTTATCTTGGTCCTTCTTTCAAGAATCTGGAAAAGAAGAGCCAAAGCATTTTATGATGCATGACCTTCTAAATGATTTGGCAAAATTCGTTTGTGAGGACATCTGCATCAGGTTAGGAGTTGATGAACCAAAAGGTATACCCAAGACAAGCCGTCATTTTTCATTTCCAACCATTGGTATTGTCCATTTTGATGGGTTTGGAAGTTTGGTTGATACTCAAAAGTTGCATACATTTATGCCAACTGACTGGAGAATGTATAATCCTTTTCATCGCCCTTGGTATTGTAAGATGTCGATAGATGACTTGTTCTCTAAATTTAAGTTGATACGCGTCTTGTCTTTGTCTAATTGTTATAACCTTAGAGAGGTTCCTAAATTTGTAGGAAATCTTAAGCATCTCCGTTCATTAGATCTCTCTTTTACTGACATAAAAAAACTACCTGACTCCATAAGTTTACTCAAAAAGTTGCAAATACTGAAGTTGAACGATTGTCGAAGATTGAAGGAGCTTCCCTCATATTTGCATCAACTGGACAATTTGCGATGCCTTGAATTTATAAATACTAAAGTCAAAATTGTGCCAGCACATTTGGGAAAGCAGAAGAATCTCCAAGTATTGATGAGTTCGTTTTACGTTGAAAAAAATAAGGAATTCAGTATTCAGAAATTAGGAGAACTGAATCTTCGTGGAAGTCTAAGAATTCATGAGCTGCAGAATATTGAGAATCCCTCTTATGCATTAGAAGCAGATTTGAAGAACAAACCAGACCTTTTGGAGCTACAGTTAGAATGGATTATTATGGGCAGCTCCTCTATTGATTCAACCAAAGTTGGGGATGTAATTGAGAATCTACGACCTTCCAAACACTTGAAAAAGTTATCAGTAAGGAACTATGTTGGTAAACAACTTCCAAATTGGTTACTCGATAATTCTTTACTGAATCTGGTGTCCTTAGCGTTGATGAATTGTACATGTTGCCAACGTTTTCCTTCGCTTGGTCTTTTGCCATTTCTGAAAAAGCTGGAGATTTCAGGGTTTGATGAGATAGTGAGAATTGATGGTGATTTTCATGGGAACAACTCTTGTTCATTTAAATCCCTTGAAACATTGATCTTCTCCAATATGAGGCAATGGGAAAAGTGGGAGTGCCAAGCTCTGACAGGTGCTTTTCCATGTCTACGACAGCTTTTCATAATAAGATGTCCGAAACTGAAAGGAGAGCTTCCACAGCAAGTTGTTCCTTTGAAAATACTACAAATTGAAGGCTGCCAAGAACTTGAGGCTTCCGCTCCGAGGGCTCTATGTTTATACCTACGTGACTGTGGAAAGCTGCATGTGTAG 2763 0.3876 MTAEMVTGALVSILVERTIDTLASRFVHIFGARKHKKKQLSHLKMNLLAIDVVAFDAEQKQFTDPRVRDWLLRAKDVVFDAEDLLDEIDYELSKSQVEAESQSATNKVWNSLKSPFVTFFENEIESRMEQVTEDLEDLATQSNVLGLKKASVVGVAPGSSSRLTYTSLPNESVIYGRDEDREFVFNWLTSDTHNKLSILSIVGMGGLGKTSLAQHVFNDPRIDGKFDIKAWVSIPQEFDVLNVSRAILDTITDSNDHSIQQEVVQRGLKEKLTGKKFLLILDDVWNERQSKWEDVQKPLIFGGQGSRILVTTRSEKVAGTMRSEKYLLQVLRKDDCWELFAKHAFQSANPQPHRDFMEIGKKIVEKCNGLPLALKTMGSLLHNKSSFWEWESIMRSEIWDFSENESDILPALRLSYLYLPSYLKKCFAFCALFPKGYVFDKEYLIQLWLAENFLESPLHKRSPKEVGEHYFNDLLSWSFFQESGKEEPKHFMMHDLLNDLAKFVCEDICIRLGVDEPKGIPKTSRHFSFPTIGIVHFDGFGSLVDTQKLHTFMPTDWRMYNPFHRPWYCKMSIDDLFSKFKLIRVLSLSNCYNLREVPKFVGNLKHLRSLDLSFTDIKKLPDSISLLKKLQILKLNDCRRLKELPSYLHQLDNLRCLEFINTKVKIVPAHLGKQKNLQVLMSSFYVEKNKEFSIQKLGELNLRGSLRIHELQNIENPSYALEADLKNKPDLLELQLEWIIMGSSSIDSTKVGDVIENLRPSKHLKKLSVRNYVGKQLPNWLLDNSLLNLVSLALMNCTCCQRFPSLGLLPFLKKLEISGFDEIVRIDGDFHGNNSCSFKSLETLIFSNMRQWEKWECQALTGAFPCLRQLFIIRCPKLKGELPQQVVPLKILQIEGCQELEASAPRALCLYLRDCGKLHV* 921
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu11g2054 920 PRINTS Disease resistance protein signature 198 213 - -
Pvu11g2054 920 PRINTS Disease resistance protein signature 271 285 - -
Pvu11g2054 920 PRINTS Disease resistance protein signature 367 381 - -
Pvu11g2054 920 PRINTS Disease resistance protein signature 625 641 - -
Pvu11g2054 920 Pfam NB-ARC domain 181 395 IPR002182 GO:0043531
Pvu11g2054 920 Pfam Rx N-terminal domain 11 102 IPR041118 -
Pvu11g2054 920 Gene3D - 415 503 IPR036388 -
Pvu11g2054 920 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 162 430 IPR027417 -
Pvu11g2054 920 Gene3D Ribonuclease Inhibitor 566 918 IPR032675 -
Pvu11g2054 920 ProSiteProfiles Leucine-rich repeat profile. 606 627 IPR001611 GO:0005515
Pvu11g2054 920 Gene3D - 11 141 - -
Pvu11g2054 920 PANTHER OS05G0414200 PROTEIN 23 885 - -
Pvu11g2054 920 PANTHER DISEASE RESISTANCE PROTEIN RP 23 885 IPR044974 GO:0006952
Pvu11g2054 920 SUPERFAMILY L domain-like 493 897 - -
Pvu11g2054 920 Gene3D - 158 330 IPR027417 -
Pvu11g2054 920 Coils Coil 121 141 - -
Pvu11g2054 920 Gene3D - 331 414 IPR042197 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu11g2054 Pvu-Chr11 47439546 47442349 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu11g2054 572 680 Receptor kinase-like Gene Family AT4G13920 33.929 5.16e-08 55.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu11g2054 - - pvu:PHAVU_011G198300g 1516.13