Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu11g2053 ATGGCCTCTTCAAATTCACCATGTGCAGCATGCAAGTTCTTGCGTCGCAAGTGCCAACCTGAGTGTGCTTTTGCACCATATTTTCCTCCTGACCAACCTCAGAAGTTTGCAAATGTTCATAGAATCTTTGGGGCCAGCAATGTCACCAAGCTTCTCAACGATTTGCACCCTCATCAACGTGAAGATGCTGTGAATTCCCTTGCTTATGAAGCTGAGATGAGACTCCGTGACCCTGTGTATGGCTGTGTTGGAGTGATATCCCTTTTGCAGCACCAACTTCGCCAGCTTCAAATGGATCTCTACTGTGCCAAATCTGAGCTCTCTAGGTACCAAAACCTAAGCATCACCACCAACCACACCCTCATGGCCTCTGAATCCGCCGCAGCCTTCCACCACCACCACCAGAATAACACTGCTAATACCTTTGCCCGAGACCATCACTATCACTTCCACCACCACCAGTTCTTCCCCAGAGACCAACACCAACAAGTAGCAAGAACCTTTGATGGAGGCAACAACTACGATGCAAGCCTCTTGGCCATGAACATATCCGCCAGCTTAGGGCAACTCAACCAGCTTCAGCATCAGAGTGCTGCTGGCGGCGGCGACGACCGCCACACTGCCAACCGCTCCTAG 636 0.5094 MASSNSPCAACKFLRRKCQPECAFAPYFPPDQPQKFANVHRIFGASNVTKLLNDLHPHQREDAVNSLAYEAEMRLRDPVYGCVGVISLLQHQLRQLQMDLYCAKSELSRYQNLSITTNHTLMASESAAAFHHHHQNNTANTFARDHHYHFHHHQFFPRDQHQQVARTFDGGNNYDASLLAMNISASLGQLNQLQHQSAAGGGDDRHTANRS* 212
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu11g2053 211 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 3 175 - -
Pvu11g2053 211 PANTHER LOB DOMAIN-CONTAINING PROTEIN 6-LIKE 3 175 - -
Pvu11g2053 211 ProSiteProfiles LOB domain profile. 6 107 IPR004883 -
Pvu11g2053 211 Pfam Lateral organ boundaries (LOB) domain 7 103 IPR004883 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu11g2053 Pvu-Chr11 47427155 47428248 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu11g2053 2 211 AS2 family AT1G65620 62.963 9.40e-80 235
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Pvu11g2053 LOB 2.9e-42 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu11g2053 - - gmx:100806890 366.311