Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu11g2021 ATGTTGGGGAAAAAACTACACTTATGCTTTGGTTTCTTATTGCTGAGTTTCAGACCACATGTCACGAAGGCACAAGCACCCATTTTCGTGGGAAGTAACTGCCAAAACAACACCCAACAACCTCTCAGTGGTGTATACCAAACAAATCTTGAGAGAATTCTCACATGGGTATCTTCGGATGCAGCCACAAGCAAAGGCTATAACTACAAAAGCATAGGCAACAACAGTCCTGTGTATGGCCTCTATGATTGTCGTGGAGATGTTGTTGGATACTTTTGCCAATTCTGTGTCTCTACTGCTGCCAAAGAAGCACCTCAGCGCTGCCCCAATAGGGTCTCTGCTATGGTTTGGTATGATTTCTGCATCCTAAGGTACTCCAATGAGAGCTTTTTTGGGACTGTTTTAACAAACCCATCATGGCATGCTTTTGGAGAAAAAAATATATCCAACATGGAAGATATTCAGAAAGGTGATGATTTTGTGAGAAGTTTGATCAGAAAAGCAACAAAGGAAACTAACCAGTTGTTTTATATGGATGTCTTTAATTTGAGTTCCACTGCAAGAAGGTATGGCTTGGTGCAATGCACTAGAGATCTCACAAATGAAGGGTGCAGACAGTGTTTGGAGACCATATTAGCCCAAGTTGCCAAATGTTGTGAACAGAAATTAGGATGGTCGATTTGGACTGGAAGTTGTGTGATTAAGTATGATGATCACATGTTTTACCAAACATCTTTAGCTGCTGAGCCTAATCTGCAAAAAGCTAAACAGGGGAGCAATAATAGGTCAAAAATCTTGATTATTAGCTTCAGTGTGACGGGGTCAATAACTATACTATGTTTGAGTGTATATTGTTGGTGCAGGAGAAGAACTAGAAAAGATGGGCTGATACCTCGTGTCGTTCGTCTATCATCATATCACAATGTTCAAACTGAGGAAACACTGAATCCAGAACTTCCTACAATCCCATTAAGCACAATTCTACAAAGTACTGATAACTTTTCTGAAGTATCAAAACTGGGGGAAGGTGGATTTGGCCCAGTATACAAGGGAATTCTGCCAGATGGAAGACAAATTGCAGTTAAAAGGCTCTCAAAATTTTCTGGCCAAGGGTCAGAGGAGTTCAATAATGAAGTAATGTTTATAGCTAAACTGCAACATCGCAACCTTGTGAGACTTCTTGCATGTTGCTTGGAGGAGAATGAAAAGATACTAGTATACGAGTATTTGCCAAATAAAAGCCTCGACTTTCACCTGTTTGATGATGAGAGGAAAAAGCTTTTTGATTGGAAATTAAGATTAAGCATTATCAATGGAATAGCAAGAGGTGTTTTATACCTTCATGAGGACTCTCGACTTAAAGTAATTCACAGAGATCTCAAAGCTAGCAATGTTCTATTAGACAATGACATGAATCCAAAAATATCTGATTTTGGATTGGCAAGGGCATTTGAAAGAGGACAGAACCAGGCAAATACAAAACGAGTAGTGGGCACTTATGGATACATGGCTCCTGAATATGCTATGGAAGGATTGTTTTCAGTGAAATCTGATGTTTTCAGTTTTGGAGTTCTAGTCCTAGAAATCATTTGTGGGAGAAAGAATAGTGGATTTTTTCTCTCAGACCATGGTCAGACTCTTCTGTTGTATGCTTGGAGAATATGGTGTGAAGGAAAATGTTTGGAAATGATGGATCCAACGCTGGAAAAATCCTTTGTAGGCAGTGAACTTGAGAGATGCATACAGATTGGTTTGTTGTGTGTTCAAGAAGATGCAAAAGATAGACCAACCATGTCTGATGTTGTTGTAATGTTGGCAAGTGACGCAATGGCCCTTCCAAAACCCAAGCAGCCACCATTTTCAGTTGGAAGAATGACCTCAGAGGAATTCTCTACATCAAAGAGTTCCAAGAATCTTTCCATTAATGATGTAACAACCTCTATTACTCTACCTAGGTAA 1959 0.3961 MLGKKLHLCFGFLLLSFRPHVTKAQAPIFVGSNCQNNTQQPLSGVYQTNLERILTWVSSDAATSKGYNYKSIGNNSPVYGLYDCRGDVVGYFCQFCVSTAAKEAPQRCPNRVSAMVWYDFCILRYSNESFFGTVLTNPSWHAFGEKNISNMEDIQKGDDFVRSLIRKATKETNQLFYMDVFNLSSTARRYGLVQCTRDLTNEGCRQCLETILAQVAKCCEQKLGWSIWTGSCVIKYDDHMFYQTSLAAEPNLQKAKQGSNNRSKILIISFSVTGSITILCLSVYCWCRRRTRKDGLIPRVVRLSSYHNVQTEETLNPELPTIPLSTILQSTDNFSEVSKLGEGGFGPVYKGILPDGRQIAVKRLSKFSGQGSEEFNNEVMFIAKLQHRNLVRLLACCLEENEKILVYEYLPNKSLDFHLFDDERKKLFDWKLRLSIINGIARGVLYLHEDSRLKVIHRDLKASNVLLDNDMNPKISDFGLARAFERGQNQANTKRVVGTYGYMAPEYAMEGLFSVKSDVFSFGVLVLEIICGRKNSGFFLSDHGQTLLLYAWRIWCEGKCLEMMDPTLEKSFVGSELERCIQIGLLCVQEDAKDRPTMSDVVVMLASDAMALPKPKQPPFSVGRMTSEEFSTSKSSKNLSINDVTTSITLPR* 653
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu11g2021 652 PANTHER CYSTEINE-RICH RECEPTOR-LIKE KINASE 17 648 - -
Pvu11g2021 652 Gene3D Transferase(Phosphotransferase) domain 1 410 614 - -
Pvu11g2021 652 SUPERFAMILY Protein kinase-like (PK-like) 318 631 IPR011009 -
Pvu11g2021 652 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 17 648 - -
Pvu11g2021 652 ProSiteProfiles Gnk2-homologous domain profile. 27 130 IPR002902 -
Pvu11g2021 652 Pfam Salt stress response/antifungal 160 238 IPR002902 -
Pvu11g2021 652 Pfam Salt stress response/antifungal 34 127 IPR002902 -
Pvu11g2021 652 Gene3D - 141 241 IPR038408 -
Pvu11g2021 652 Gene3D - 28 130 IPR038408 -
Pvu11g2021 652 Pfam Domain of unknown function (DUF3403) 607 652 IPR021820 GO:0004674
Pvu11g2021 652 ProSitePatterns Serine/Threonine protein kinases active-site signature. 455 467 IPR008271 GO:0004672|GO:0006468
Pvu11g2021 652 MobiDBLite consensus disorder prediction 616 636 - -
Pvu11g2021 652 Pfam Protein tyrosine and serine/threonine kinase 338 604 IPR001245 GO:0004672|GO:0006468
Pvu11g2021 652 ProSiteProfiles Protein kinase domain profile. 334 620 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pvu11g2021 652 CDD STKc_IRAK 340 605 - -
Pvu11g2021 652 ProSiteProfiles Gnk2-homologous domain profile. 136 241 IPR002902 -
Pvu11g2021 652 Gene3D Phosphorylase Kinase; domain 1 298 409 - -
Pvu11g2021 652 SMART serkin_6 334 610 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu11g2021 Pvu-Chr11 47048914 47051940 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu11g2021 10 652 Receptor kinase-like Gene Family AT4G05200 41.518 6.04e-179 523
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Pvu11g2021 Pkinase 3.2e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu11g2021 - - pvu:PHAVU_011G194500g 986.097