Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu11g1879 ATGGAAAACCACATCTACTCCTCCTACAGCCCTTCCACCAACTACCGATTCCGCGACCCCGACCCCTCCACCATGTTCCTCTCCCACCACCACCACCGCGCCGCCGACTCCGCCTCCCTCCGCTTCTCCTCCTCCCTCGCCGACGACATTGCCCCGCCTGGCGTCACCTCCCGCGTAGCCTCCTCCGCCGCCGCCAACTACCTCTCCCCCTGGGCCTCCTCCGCCGCCACCTCCTCCCTCGACTTCAAACGCTCCTCCGAGGCTCTCTACCATCCAACCATTTTGGGTACAATTGGGCAAAGTGAAGCTTGGTATTCTACAAACTCACTGGCCAAGCGCCCTAGATATGAAAGTGCTTCCAATATGACTATATATCCACAGAGGCCAGGAGAGAAAGATTGTGCCCACTATATGCTCACGAGAACCTGTAAGTTTGGAGATAGCTGCAAGTTTGACCATCCTGTTTGGGTTCCTGAGGGTGGAATCCCGGATTGGAAAGAGGTTCCAAATGTTGTTACAAGTGAAACTCCTCCTGAGAGACCAGGGGAACCAGATTGTCCATACTTTCTGAAAACTCAGAGATGCAAGTTTGGTTCGAAGTGCAAATTTAATCATCCTATGGTTTCCTCTGAAAATGAGGATATATCTTCTGGCTTACCCGAGAGGCCATCAGAGCCCCCTTGCACGTTCTACATGAAAACTGGAAAATGTAAATTTGGTGCTGCTTGCAAATTCCATCACCCCAAGGATATCCAGATTCAGTTGTCTGATGAGTTTAGTCATACTGCTGCACAGACAGAGACAAGTTCTATGATAGGAGGGGCATTTGGAGATATACAGCCAATTAAGTCTCTTATATCTCCATCATTGCAAAATAGCAAAGGACTTCCAGTAAGACTGGGGGAAGTGGATTGTCCATTCTACATGAAAACGGGCAGTTGCAAGTATGGTGCCACTTGCCGCTACAATCATCCTGACAGGAACGCAATTAATCCTCCCATTGCTGGATTAGGCGCTTCTATTTTGCCATCCTCAGCTGCTAGTCTGAATATTGGACTTCTTAGTCCAGCTGTGTCTGTCTATCAAGCTTTTGACCCAAGGCTGTCAAATCCAATGTCTCAGGTGGGAATTGCAGAAAGTATCTATCCTCAGCGACCTGGCCAGATTGAATGTGATTTTTACATGAAAACTGGCGAGTGTAAATTCGGGGAAAGATGCAAGTATCATCACCCAATTGATCGCTCAGCACCATCACTGTCAAAGCAGGCTTCTGTCAAGCTCACTCCTGCAGGATTACCTAGAAGAGAGGGTGCTGTTATTTGTCCATATTATTTGAAAACTGGAACATGCAAGTTTGGTGCAACCTGCAAGTTTGACCACCCACCACCCGGAGAAGTTGTGGAGATGGCAAAATCACAAGGAACATCAGCCGATGGAGGGGAAGCAGAAGACTGA 1455 0.4893 MENHIYSSYSPSTNYRFRDPDPSTMFLSHHHHRAADSASLRFSSSLADDIAPPGVTSRVASSAAANYLSPWASSAATSSLDFKRSSEALYHPTILGTIGQSEAWYSTNSLAKRPRYESASNMTIYPQRPGEKDCAHYMLTRTCKFGDSCKFDHPVWVPEGGIPDWKEVPNVVTSETPPERPGEPDCPYFLKTQRCKFGSKCKFNHPMVSSENEDISSGLPERPSEPPCTFYMKTGKCKFGAACKFHHPKDIQIQLSDEFSHTAAQTETSSMIGGAFGDIQPIKSLISPSLQNSKGLPVRLGEVDCPFYMKTGSCKYGATCRYNHPDRNAINPPIAGLGASILPSSAASLNIGLLSPAVSVYQAFDPRLSNPMSQVGIAESIYPQRPGQIECDFYMKTGECKFGERCKYHHPIDRSAPSLSKQASVKLTPAGLPRREGAVICPYYLKTGTCKFGATCKFDHPPPGEVVEMAKSQGTSADGGEAED* 485
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu11g1879 484 ProSiteProfiles Zinc finger C3H1-type profile. 222 250 IPR000571 GO:0046872
Pvu11g1879 484 ProSiteProfiles Zinc finger C3H1-type profile. 385 413 IPR000571 GO:0046872
Pvu11g1879 484 PANTHER CCCH ZINC FINGER/TIS11-RELATED 75 474 IPR045877 GO:0003729
Pvu11g1879 484 SUPERFAMILY CCCH zinc finger 388 413 IPR036855 GO:0046872
Pvu11g1879 484 Gene3D - 219 335 - -
Pvu11g1879 484 Gene3D - 383 477 - -
Pvu11g1879 484 SUPERFAMILY CCCH zinc finger 226 250 IPR036855 GO:0046872
Pvu11g1879 484 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 130 154 IPR000571 GO:0046872
Pvu11g1879 484 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 388 411 IPR000571 GO:0046872
Pvu11g1879 484 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 439 462 IPR000571 GO:0046872
Pvu11g1879 484 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 225 249 IPR000571 GO:0046872
Pvu11g1879 484 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 302 325 IPR000571 GO:0046872
Pvu11g1879 484 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 182 207 IPR000571 GO:0046872
Pvu11g1879 484 SMART c3hfinal6 128 155 IPR000571 GO:0046872
Pvu11g1879 484 SMART c3hfinal6 222 249 IPR000571 GO:0046872
Pvu11g1879 484 SMART c3hfinal6 385 412 IPR000571 GO:0046872
Pvu11g1879 484 SMART c3hfinal6 180 207 IPR000571 GO:0046872
Pvu11g1879 484 SMART c3hfinal6 299 326 IPR000571 GO:0046872
Pvu11g1879 484 SMART c3hfinal6 435 462 IPR000571 GO:0046872
Pvu11g1879 484 Gene3D - 165 216 - -
Pvu11g1879 484 Gene3D - 85 164 - -
Pvu11g1879 484 ProSiteProfiles Zinc finger C3H1-type profile. 435 463 IPR000571 GO:0046872
Pvu11g1879 484 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 37 75 474 - -
Pvu11g1879 484 ProSiteProfiles Zinc finger C3H1-type profile. 299 327 IPR000571 GO:0046872
Pvu11g1879 484 SUPERFAMILY CCCH zinc finger 303 326 IPR036855 GO:0046872
Pvu11g1879 484 SUPERFAMILY CCCH zinc finger 128 155 IPR036855 GO:0046872
Pvu11g1879 484 ProSiteProfiles Zinc finger C3H1-type profile. 128 156 IPR000571 GO:0046872
Pvu11g1879 484 SUPERFAMILY CCCH zinc finger 185 207 IPR036855 GO:0046872
Pvu11g1879 484 SUPERFAMILY CCCH zinc finger 439 462 IPR036855 GO:0046872
Pvu11g1879 484 ProSiteProfiles Zinc finger C3H1-type profile. 180 208 IPR000571 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu11g1879 Pvu-Chr11 45672467 45688469 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu11g1879 284 477 C2H2 Transcription Factor Family AT3G02830 34.359 9.05e-29 115
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Pvu11g1879 zf-CCCH 1.5e-10 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu11g1879 - - gmx:100793976 870.537
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu11g1879 11 45672467 45688469 Pvu11g1879 11 45672467 45688469 ECH